Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0601
         (593 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   3.2  
CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein...    24   4.3  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          23   9.8  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 18  SLEKINATENAI-SAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAP 164
           SL+  NA   A   ++A  ++      +  +++ HW+T   +  DT++ P
Sbjct: 588 SLDVRNAFNTASWKSIAMALRSKEVPASLQKLLQHWMTDRQLVFDTDDGP 637


>CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein
           protein.
          Length = 271

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +3

Query: 411 PHSNDALSTPCTLFWLLPLL----INY---CTLF*WHNMYYCESSR 527
           P  NDA++    L  +LPL+    + Y   C L+ W+ +   E +R
Sbjct: 223 PARNDAMANKVVLLLVLPLIAVLGVAYGAICILYWWNRLLLIEPNR 268


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 362 DMN*IIRHLTVSVEVMQPFAHRQG 291
           D+   +RH+  +  V QP  HR G
Sbjct: 205 DLGLAVRHIVATDTVDQPSTHRVG 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,447
Number of Sequences: 2352
Number of extensions: 11823
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)