Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0601
(593 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08890-1|CAA70103.1| 1097|Homo sapiens Ran_GTP binding protein 5... 79 9e-15
U72761-1|AAC51317.1| 1097|Homo sapiens karyopherin beta 3 protein. 79 9e-15
BC045640-1|AAH45640.1| 1115|Homo sapiens RAN binding protein 5 p... 79 9e-15
BC019309-1|AAH19309.1| 1097|Homo sapiens RANBP5 protein protein. 79 9e-15
BC001497-1|AAH01497.1| 1097|Homo sapiens RANBP5 protein protein. 79 9e-15
BC000947-1|AAH00947.1| 310|Homo sapiens RANBP5 protein protein. 79 9e-15
AL356580-2|CAI13757.1| 1097|Homo sapiens RAN binding protein 5 p... 79 9e-15
AL137120-1|CAI16520.1| 1097|Homo sapiens RAN binding protein 5 p... 79 9e-15
BX537405-1|CAD97647.1| 1109|Homo sapiens hypothetical protein pr... 74 3e-13
BC098406-1|AAH98406.1| 1105|Homo sapiens RAN binding protein 6 p... 74 3e-13
BC012805-1|AAH12805.2| 414|Homo sapiens RANBP6 protein protein. 74 3e-13
AL162384-1|CAI12713.1| 1105|Homo sapiens RAN binding protein 6 p... 74 3e-13
AF039023-1|AAC14260.1| 1105|Homo sapiens Ran-GTP binding protein... 74 3e-13
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 34 0.33
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 34 0.33
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 34 0.33
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 34 0.33
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 34 0.33
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 34 0.33
>Y08890-1|CAA70103.1| 1097|Homo sapiens Ran_GTP binding protein 5
protein.
Length = 1097
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 959 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1018
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1019 LIESNHPIVLGPN 1031
>U72761-1|AAC51317.1| 1097|Homo sapiens karyopherin beta 3 protein.
Length = 1097
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 959 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1018
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1019 LIESNHPIVLGPN 1031
>BC045640-1|AAH45640.1| 1115|Homo sapiens RAN binding protein 5
protein.
Length = 1115
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 977 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1036
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1037 LIESNHPIVLGPN 1049
>BC019309-1|AAH19309.1| 1097|Homo sapiens RANBP5 protein protein.
Length = 1097
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 959 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1018
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1019 LIESNHPIVLGPN 1031
>BC001497-1|AAH01497.1| 1097|Homo sapiens RANBP5 protein protein.
Length = 1097
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 959 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1018
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1019 LIESNHPIVLGPN 1031
>BC000947-1|AAH00947.1| 310|Homo sapiens RANBP5 protein protein.
Length = 310
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 172 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 231
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 232 LIESNHPIVLGPN 244
>AL356580-2|CAI13757.1| 1097|Homo sapiens RAN binding protein 5
protein.
Length = 1097
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 959 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1018
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1019 LIESNHPIVLGPN 1031
>AL137120-1|CAI16520.1| 1097|Homo sapiens RAN binding protein 5
protein.
Length = 1097
Score = 79.4 bits (187), Expect = 9e-15
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
D+++ E +NATEN ISAV KI+K+ +N +E++ HWL+WLP+ ED EEA + LC+
Sbjct: 959 DSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCD 1018
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1019 LIESNHPIVLGPN 1031
>BX537405-1|CAD97647.1| 1109|Homo sapiens hypothetical protein
protein.
Length = 1109
Score = 74.1 bits (174), Expect = 3e-13
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
++++ + + ATEN ISA+ KI+K+ + +N DE++ HWL+WLP+ ED EEA + LC+
Sbjct: 971 NSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCD 1030
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1031 LIESNHPVVIGPN 1043
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/47 (25%), Positives = 30/47 (63%)
Frame = +2
Query: 272 DAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQIALS 412
+ + ++P ++ ++RQ+Q++ +L+ C+ L ++ +EALQ L+
Sbjct: 1061 ETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLN 1107
>BC098406-1|AAH98406.1| 1105|Homo sapiens RAN binding protein 6
protein.
Length = 1105
Score = 74.1 bits (174), Expect = 3e-13
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
++++ + + ATEN ISA+ KI+K+ + +N DE++ HWL+WLP+ ED EEA + LC+
Sbjct: 967 NSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCD 1026
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1027 LIESNHPVVIGPN 1039
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/47 (25%), Positives = 30/47 (63%)
Frame = +2
Query: 272 DAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQIALS 412
+ + ++P ++ ++RQ+Q++ +L+ C+ L ++ +EALQ L+
Sbjct: 1057 ETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLN 1103
>BC012805-1|AAH12805.2| 414|Homo sapiens RANBP6 protein protein.
Length = 414
Score = 74.1 bits (174), Expect = 3e-13
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
++++ + + ATEN ISA+ KI+K+ + +N DE++ HWL+WLP+ ED EEA + LC+
Sbjct: 276 NSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCD 335
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 336 LIESNHPVVIGPN 348
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/47 (25%), Positives = 30/47 (63%)
Frame = +2
Query: 272 DAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQIALS 412
+ + ++P ++ ++RQ+Q++ +L+ C+ L ++ +EALQ L+
Sbjct: 366 ETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLN 412
>AL162384-1|CAI12713.1| 1105|Homo sapiens RAN binding protein 6
protein.
Length = 1105
Score = 74.1 bits (174), Expect = 3e-13
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
++++ + + ATEN ISA+ KI+K+ + +N DE++ HWL+WLP+ ED EEA + LC+
Sbjct: 967 NSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCD 1026
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1027 LIESNHPVVIGPN 1039
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/47 (25%), Positives = 30/47 (63%)
Frame = +2
Query: 272 DAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQIALS 412
+ + ++P ++ ++RQ+Q++ +L+ C+ L ++ +EALQ L+
Sbjct: 1057 ETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLN 1103
>AF039023-1|AAC14260.1| 1105|Homo sapiens Ran-GTP binding protein
protein.
Length = 1105
Score = 74.1 bits (174), Expect = 3e-13
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +3
Query: 9 DARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCE 188
++++ + + ATEN ISA+ KI+K+ + +N DE++ HWL+WLP+ ED EEA + LC+
Sbjct: 967 NSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEEAIQTLSFLCD 1026
Query: 189 LASSGHGALSTPD 227
L S H + P+
Sbjct: 1027 LIESNHPVVIGPN 1039
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/47 (25%), Positives = 30/47 (63%)
Frame = +2
Query: 272 DAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQIALS 412
+ + ++P ++ ++RQ+Q++ +L+ C+ L ++ +EALQ L+
Sbjct: 1057 ETINYEDPCAKRLANVVRQVQTSEDLWLECVSQLDDEQQEALQELLN 1103
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.33
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 12 ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
A + +I E AV K++ YN++ I +DEI+ H L +P+ D
Sbjct: 73 ANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 118
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 34.3 bits (75), Expect = 0.33
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 12 ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
A + +I E AV K++ YN++ I +DEI+ H L +P+ D
Sbjct: 65 ANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 110
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 34.3 bits (75), Expect = 0.33
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 12 ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
A + +I E AV K++ YN++ I +DEI+ H L +P+ D
Sbjct: 72 ANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 117
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.33
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 12 ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
A + +I E AV K++ YN++ I +DEI+ H L +P+ D
Sbjct: 73 ANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 118
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 34.3 bits (75), Expect = 0.33
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 12 ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
A + +I E AV K++ YN++ I +DEI+ H L +P+ D
Sbjct: 73 ANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 118
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.33
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 12 ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
A + +I E AV K++ YN++ I +DEI+ H L +P+ D
Sbjct: 73 ANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,440,958
Number of Sequences: 237096
Number of extensions: 1652586
Number of successful extensions: 3567
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3567
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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