Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0601
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    54   6e-08
AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical ...    31   0.47 
AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormo...    30   1.1  
AC006675-9|AAK84553.1|  431|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF332213-1|AAK17984.1|  213|Caenorhabditis elegans nuclear recep...    29   2.5  
AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    29   2.5  
AC006675-7|AAK84555.2|  409|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear recep...    28   5.8  
AF106573-4|AAF02105.1|  365|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    28   5.8  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
            family protein 3 protein.
          Length = 1092

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +3

Query: 9    DARSLEKIN-ATENAISAVAKIIKYNHSQINR-DEIITHWLTWLPVTEDTEEAPHVYALL 182
            DAR+ E+   ATENAISA AKII           +++  +L+WLP   DTEE+P++Y  L
Sbjct: 950  DARATEESTVATENAISAFAKIIGNVPLPAEAYGKVVEMFLSWLPTYSDTEESPYIYTCL 1009

Query: 183  CELASSGHGALSTPD 227
             EL      AL  P+
Sbjct: 1010 AELFDKQDAALFGPE 1024


>AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical
           protein H43I07.2 protein.
          Length = 366

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 6   PDARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
           P A +L ++   E    A+ KI  Y ++ + +DE++ H L  LP+  D
Sbjct: 78  PIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD 125


>AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 130 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 237 RVLATLPKRFAPTLYQTITLSMRKWLHYFDRYSQMPN 347
           +++  L K  A T ++T  L++ KWL YFD +  +P+
Sbjct: 214 QLVTKLGKDEALTFWETDFLTVAKWLTYFDDFQLLPH 250


>AC006675-9|AAK84553.1|  431|Caenorhabditis elegans Hypothetical
           protein M02H5.3 protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 216 STPDAPQRVLATLPKRFAPTLYQTITLSMRKWLHYFDRYSQMPNYL 353
           S  + P +V+    K     +++   L   KW  YFD + ++P+ L
Sbjct: 197 SAQEKPTKVMEKFGKDETFAIWEDDVLKTAKWFSYFDDFQKLPSQL 242


>AF332213-1|AAK17984.1|  213|Caenorhabditis elegans nuclear receptor
           NHR-99 protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 273 TLYQTITLSMRKWLHYFDRYSQMPNYL 353
           TL+Q   L   KWL YF  + Q+P+ L
Sbjct: 42  TLWQDDFLKTAKWLTYFSEFQQLPDGL 68


>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 273 TLYQTITLSMRKWLHYFDRYSQMPNYL 353
           TL+Q   L   KWL YF  + Q+P+ L
Sbjct: 202 TLWQDDFLKTAKWLTYFSEFQQLPDGL 228


>AC006675-7|AAK84555.2|  409|Caenorhabditis elegans Hypothetical
           protein M02H5.5 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 177 LLCELASSGHGALSTPDAPQRVLATLPKRFAPTLYQTITLSMRKWLHYFDRYSQMP 344
           +L +LA       ST     ++L+   K     +++T  L + KW  YFD + ++P
Sbjct: 162 ILKKLALGLEKIRSTQCNVTKILSKFGKDEVLAMWETDMLKIAKWFTYFDNFQKLP 217


>AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear receptor
           NHR-98 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276 LYQTITLSMRKWLHYFDRYSQMPN 347
           L++   L M KWL YFD + ++P+
Sbjct: 138 LWEEEMLRMAKWLTYFDDFQRLPH 161


>AF106573-4|AAF02105.1|  365|Caenorhabditis elegans Hypothetical
           protein F52D2.7 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 111 ITHWLTWLPVTE-DTEEAPHVYALLCELASSGHGALS--TPDAPQRVLATLPKR 263
           + H++  L  +  DT +AP   AL+ ELA SGH A+    PD   +V     KR
Sbjct: 71  VHHFIRCLMTSRNDTAKAP--VALILELAESGHDAMKKLIPDVVAKVADVHAKR 122


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276 LYQTITLSMRKWLHYFDRYSQMPN 347
           L++   L M KWL YFD + ++P+
Sbjct: 218 LWEEEMLRMAKWLTYFDDFQRLPH 241


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 269 ADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQ 400
           ADA+P D     Q+ A L+++Q++AE  N  +  L  D+ + ++
Sbjct: 367 ADALPKDARERVQVEAALQKMQTSAEYVNE-MQRLHEDYAQYME 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,244
Number of Sequences: 27780
Number of extensions: 257019
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)