Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0601
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    52   2e-07
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    35   0.047
At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative i...    29   3.1  
At3g08970.1 68416.m01048 DNAJ heat shock N-terminal domain-conta...    28   4.1  
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    28   5.4  
At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At5g28210.1 68418.m03416 mRNA capping enzyme family protein simi...    27   7.1  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    27   7.1  
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   9.4  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   9.4  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
            protein contains Pfam profile: PF03130 PBS lyase
            HEAT-like repeat
          Length = 1116

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = +3

Query: 6    PDARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLC 185
            P+AR  E   A +NA+SAV KI +++   I+  +++  WL  LP++ D  EA  V+  LC
Sbjct: 977  PNARQSENAMAYDNAVSAVGKICQFHRDSIDSSQVLPAWLNCLPISNDVLEAKVVHDQLC 1036

Query: 186  EL 191
             +
Sbjct: 1037 SM 1038


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
            similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 42   ENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCELASSGH 206
            +NA  A A++I  +   +  ++++  +L  LP+ ED EE+  VY  +  L SS +
Sbjct: 926  DNAAGATARMIVVHPQLVPLNQVLPVFLRGLPLKEDQEESMAVYTCIYSLVSSSN 980


>At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514324; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 385

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 12  ARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 149
           A +  +I   E    A+ K+   N++ + +DE++ H L  +P+  D
Sbjct: 105 ANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRLGLIPIAAD 150


>At3g08970.1 68416.m01048 DNAJ heat shock N-terminal
           domain-containing protein low similarity to
           PIR|A47079|A47079 heat shock protein dnaJ - Lactococcus
           lactis; contains Pfam profile PF00226 DnaJ domain
          Length = 572

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 33  NATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVY--ALLCELASSGH 206
           NA   + S+    IK  +SQ+ + +++   +TWL ++    +    Y  +++ E+A S  
Sbjct: 181 NAESKSKSSTVAAIKTINSQVYKKDVVDQGMTWLLLSYLPSQRGSQYHESIIEEVAESLQ 240

Query: 207 GAL 215
           GAL
Sbjct: 241 GAL 243


>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 123 LTWL-PVTEDTEEAPHVYALLCELASSGHGALSTPDAPQRVLATLPKRFA-PTLYQTITL 296
           L WL PV  +T +A H +  + E ASSG  A   P A Q +L       A     +   L
Sbjct: 452 LQWLVPVATNTTKAHHGFGWVGEWASSGSEANQRP-AGQTILRIDTLHHADKEKTEAYIL 510

Query: 297 SMRKWLHY 320
            +  WLH+
Sbjct: 511 DLVVWLHH 518


>At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 680

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 305 QMVALLRQIQSNAELFNSCLMTLSNDHKEALQI 403
           Q+ +LLR +++  E F  C++T    H++ LQ+
Sbjct: 576 QLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQL 608


>At5g28210.1 68418.m03416 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF03919: mRNA capping enzyme
           C-terminal domain
          Length = 625

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 178 YYASSRAADTALYRHLMPRNVCWPHSRSVSRRRCTKR*PC 297
           YY ++  AD   Y  L+ R+ C+  +R    RR   R PC
Sbjct: 313 YYYATWKADGTRYMMLLTRDGCYLVNREYRFRRVQMRFPC 352


>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 48   AISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCELASSGHGALSTPD 227
            AISA    ++ NH  +N D+I     T++      ++   V  L  ++A   +G +S PD
Sbjct: 2124 AISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYG-ISPPD 2182

Query: 228  APQ 236
             PQ
Sbjct: 2183 NPQ 2185


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 ELASSGHGALSTPDAPQRVLATLPKRFAPT 275
           +L S G+G   +P  P R  + +PKR  P+
Sbjct: 69  KLTSGGNGVAVSPVKPARATSQVPKRVPPS 98


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 48   AISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCELASSGHGALSTPD 227
            AISA    ++ NH  +N D+I     T++      ++   +  L  ++A   +G +S PD
Sbjct: 2076 AISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYG-ISPPD 2134

Query: 228  APQ 236
             PQ
Sbjct: 2135 NPQ 2137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,683
Number of Sequences: 28952
Number of extensions: 228474
Number of successful extensions: 523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)