Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0600
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 109 1e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 97 6e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 4e-15
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.27
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.4
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.4
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 1.9
SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7) 28 4.4
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 4.4
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 5.8
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 5.8
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 5.8
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 7.6
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 109 bits (263), Expect = 1e-24
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 435 TREHALLAFTLGVKQLIVGVNQ--MGSLNHHTVSP 533
TREHA+L +LGV QLIV +N+ M L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 97.5 bits (232), Expect = 6e-21
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 435 TREHALLAFTLGVKQLIVGVNQM 503
TREHA+LA T GVK L++ VN+M
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKM 292
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +1
Query: 124 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 255
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNT 209
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 186
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 4e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 362
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 184 MGKGSFKYAWVLDKLKAERERGIT 255
MGKGSFKYAWVLDKLKAERERGIT
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGIT 24
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 35.1 bits (77), Expect = 0.038
Identities = 25/64 (39%), Positives = 30/64 (46%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 244 RGIT 255
RGIT
Sbjct: 1987 RGIT 1990
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 252 HIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
HI L K + + +T ID PGH F G + D VL+VAA G
Sbjct: 64 HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 55 THINIVVIGHVDSGKSTTTGHLIY 126
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 485
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 486 VGVNQM 503
+ N++
Sbjct: 123 ILQNKI 128
>SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7)
Length = 154
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 193 GSFKYAWVLDKLKAERERGITSILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIA 372
GSFK ++ + R +TS++L GSS + ST +L + + S ++ P R+I+
Sbjct: 5 GSFKINAQMESSQKSRPARVTSVVLMGSSVIRSTKCATLSKPNAKSSLKS---HPARVIS 61
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +3
Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 392
I + + + +D PGH F G D +++VAA
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 440
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 348 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNQMGSLNHHTV 527
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ +++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 528 S 530
+
Sbjct: 849 A 849
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = -1
Query: 395 TGSYDEH--SAISLRGSCDHVLDEISVSRSINDGNIVLASFEL-PESNIDV---IPRSRS 234
TG EH S+ S H + + SR D + S + PE++ V +PR S
Sbjct: 699 TGYLSEHYSSSFSTHFEGTHYSNHVPASRPQKDRSRSFTSGDTDPENSTKVAPRLPRKHS 758
Query: 233 AFSLSNTQAYLKDPLP 186
S S A+L PLP
Sbjct: 759 EHSSSRFGAHLAPPLP 774
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,692,303
Number of Sequences: 59808
Number of extensions: 334669
Number of successful extensions: 893
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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