Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0599
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   3e-04
UniRef50_A2DS60 Cluster: Cytidine and deoxycytidylate deaminase ...    34   3.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = -2

Query: 364 SFFLLLIWVDELTAHLVLRGYWSP 293
           S FLLL WVDELTAHLVL GYWSP
Sbjct: 152 SRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A2DS60 Cluster: Cytidine and deoxycytidylate deaminase
           zinc-binding region family protein; n=1; Trichomonas
           vaginalis G3|Rep: Cytidine and deoxycytidylate deaminase
           zinc-binding region family protein - Trichomonas
           vaginalis G3
          Length = 264

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 315 TRWAVSSSTHISNKKNEYC-VEPCCKIPCYKRVTYMRVSDTFFL*DQQIQKGILKKIRLS 491
           +RWA+ + +++    + YC  EPCC   C   + + RV   FF+       G++ +  ++
Sbjct: 187 SRWAIQNDSYLCTNLDVYCYYEPCCM--CTMAMVHSRVGRLFFIEPNPKYGGVMNQAHIN 244


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,286,742
Number of Sequences: 1657284
Number of extensions: 12254301
Number of successful extensions: 24395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24391
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)