Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0599
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   4.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 378 VPRSTHFFYCLYGWTSSQPTWC*EVTGAHRHLQRKCATHLKNL 250
           +P+   F YCL G  S +     E  G  R    K A H+ ++
Sbjct: 423 IPKWRQFLYCLAGDESFRKRRQREAAGNCRKRGEKIARHINSV 465


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 719 RFFFGRDNVF*IDED 675
           R+FFGRD+V  +D D
Sbjct: 303 RYFFGRDSVDHVDFD 317


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 158 NTISFILLFNLINTDAYDDAY 96
           N ++FI+ F+ + +D Y+D +
Sbjct: 130 NGLNFIICFSKLLSDMYEDTF 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,424
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)