Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0599
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C...    32   0.37 
At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family pr...    29   4.5  
At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family pr...    29   4.5  
At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family pr...    28   6.0  

>At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain;
          Length = 514

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 103 MPISGLPVVQRSSCKYEIRCLSYKTKRGYH 14
           +P  G  VV+  SC YE+RC S+ ++RGY+
Sbjct: 89  LPPDGSRVVKVPSCNYELRC-SFLSQRGYY 117


>At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 403

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 273 CATHLKNLPLPSIVGMYLPCYRKVNCITSRYIS 175
           C TH+  LPL S  G+YLP  R+      R  S
Sbjct: 3   CFTHVPPLPLFSTSGIYLPASRRFTSFRIRMSS 35


>At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 404

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 273 CATHLKNLPLPSIVGMYLPCYRKVNCITSRYIS 175
           C TH+  LPL S  G+YLP  R+      R  S
Sbjct: 3   CFTHVPPLPLFSTSGIYLPASRRFTSFRIRMSS 35


>At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 401

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 273 CATHLKNLPLPSIVGMYLPCYRK 205
           C TH+  LPL S  G+YLP  R+
Sbjct: 3   CFTHVPPLPLFSTSGIYLPASRR 25


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,697,555
Number of Sequences: 28952
Number of extensions: 272870
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)