Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0598
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 55 1e-08
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 30 0.34
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 28 1.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 1.8
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 26 5.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 5.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.3
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 9.7
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.7
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 25 9.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.7
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Frame = +2
Query: 524 DHEDEPFS--EIMIHQAIHTIEYVLSTISHTASYLRLWA 634
+ + EPF E++IHQ IHTIE+ L +SHTASYLRLWA
Sbjct: 678 EKQAEPFELGEVVIHQVIHTIEFCLGCVSHTASYLRLWA 716
Score = 52.0 bits (119), Expect = 7e-08
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +1
Query: 1 MKLSIIFGVIHMIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKW 174
MKLSII GVIHM F + +S+ NY FFKR+ I+ F+P ++ KW
Sbjct: 525 MKLSIILGVIHMTFCLFLSLSNYRFFKRKLDIYAVFVPSLIFLEAIFGYLVITIVYKW 582
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 300 MFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTD 476
++ Q +Q V AL+C+P +L+ KP L N E+ S+N + ++ D
Sbjct: 614 LYPGQKYLQVGLVIAALICVPWLLIVKPFVLWRRHSNE---ENKYQSLNSDLPNVDEAD 669
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = -3
Query: 252 VDEQDQHRRSAALGVRQLIILSAVRDPFXXXXXXXXXXX*RQKDDLREELEEDGVATLEE 73
VD+ +R L S PF R K+D E + GV++LEE
Sbjct: 289 VDDGKMTKRFYDLDGNDFFWESNASKPFPKVAENIDEELTRYKNDASEITRKSGVSSLEE 348
Query: 72 IVVDHAHADTEY 37
+ VD A AD+ Y
Sbjct: 349 VNVD-AFADSTY 359
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 407 LLSGEQVQRLPEQHDGDAEQRDEHEHALDVALSVEHELLAALLRDVLREQHMLMNRI 237
LL E+ +L E+ E+R + +A AL ++ L + L+EQ +LM +I
Sbjct: 350 LLQNEEFHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKI 406
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 261 FSKNVPEEGCKEFMFDAQSDIQ 326
FSKN+P CK F+F IQ
Sbjct: 462 FSKNIPASLCKHFLFSGTKIIQ 483
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/45 (24%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 398 GEQVQR--LPEQHDGDAEQRDEHEHALDVALSVEHELLAALLRDV 270
G+Q+++ LP Q +++Q +H+ ++V S++ ++ A ++V
Sbjct: 784 GQQLRQESLPSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEV 828
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 287 ALLRDVLREQHMLMNRISTDGAQPWVYASSSFLVLYAIHLKN 162
A++R+ E + + ++ +QPW + S L + I KN
Sbjct: 270 AVVRETYEESGVDVEKVLYYASQPWPFPQSLMLACFGIARKN 311
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 114 REELEEDGVATLEEIVVDHAHADTEYHVDY 25
+ E+EE A +E+++ H +AD+ +VDY
Sbjct: 671 KSEMEEKE-AIMEKLIYSHQYADSLSYVDY 699
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/24 (29%), Positives = 17/24 (70%)
Frame = -3
Query: 102 EEDGVATLEEIVVDHAHADTEYHV 31
++D ++ ++++ +DHAH D + V
Sbjct: 1585 DKDSLSAVKKLALDHAHCDYNFSV 1608
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 321 IQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQ-GIELQE 467
+Q FV +++ + PL LATK+ +PK G V Q GI + E
Sbjct: 403 VQPYFVLYSIMQFGFSVGSAPLVSLATKQLHPKYHMITGVVVQVGISIGE 452
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 117 LREELEEDGVATLEEIVVDHAHADTEYHVD 28
LRE L E +A+ I++D AH T H D
Sbjct: 521 LREFLTEPDLASYSVIIIDEAHERT-LHTD 549
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 7 LSIIFGVIHMIFGVCMSVVNYNFFKRRYSI 96
LSI+FGV+H++ V + + F R S+
Sbjct: 158 LSIVFGVLHILSFVAYLIAFFPFGTRTVSL 187
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.7
Identities = 30/99 (30%), Positives = 42/99 (42%)
Frame = -1
Query: 407 LLSGEQVQRLPEQHDGDAEQRDEHEHALDVALSVEHELLAALLRDVLREQHMLMNRISTD 228
LL +QR + HD E D EH + + VE +L R L EQ L +R+ D
Sbjct: 611 LLQEVSIQRALKGHDHIVELMDSWEHGGFLYMQVELCENGSLDR-FLEEQGQL-SRL--D 666
Query: 227 GAQPWVYASSSFLVLYAIHLKNIMNTMYKNSSARKTI*G 111
+ W L L IH KN ++ K ++ T G
Sbjct: 667 EFRVWKILVEVALGLQFIHHKNYVHLDLKPANVMITFEG 705
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,516
Number of Sequences: 5004
Number of extensions: 40847
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -