Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0598
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)                  58   5e-09
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)                  30   1.5  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18)                    28   5.9  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   7.7  

>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
          Length = 1128

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 521 HDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWA 634
           H+ E+  F E  +HQAIHTIEY L  IS+TASYLRLWA
Sbjct: 723 HEEEEFDFGEAFVHQAIHTIEYCLGCISNTASYLRLWA 760



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 1   MKLSIIFGVIHMIFGVCMSVVNYNFFKRRYS 93
           MKLSI+ GVIHM+FGVC+S  N+ + K + S
Sbjct: 570 MKLSIVLGVIHMMFGVCLSFFNHRYIKTQSS 600



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +3

Query: 243 VHQHMLFSKNVPEEGCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYL 392
           ++  + F+K++     K+ +F  Q+ IQ + V IA+LC+P MLL KP YL
Sbjct: 633 INMFLQFAKDIEP---KDQVFSGQAVIQPLLVVIAVLCVPWMLLVKPFYL 679


>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
          Length = 345

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = -1

Query: 404 LSGEQVQRLPEQHDGDAEQRDEHEHAL-DVALSVEHELLAALLRDVLREQHMLMNRISTD 228
           L  E + + P Q  G+   +    ++L +  L+ +H  +A  +  + +E   L  RI+ +
Sbjct: 108 LEKENLSKKPWQMSGETGSKARPINSLLEEDLNFDHTAVAEDISSLAKEAEQLKLRIAEE 167

Query: 227 GAQPWVYASSSFLVLYAIHLKNIMNTMYKNSSARKTI*GRNSRKME 90
             +     SSS  +LY I++  + +  + N + +       SRK+E
Sbjct: 168 KNKYHDQESSSHKILYRINIDGLQHFYFLNQTVKDV-----SRKLE 208


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 388  TCSPLRRTTPSPNIPTAASTKASSCRSRPTSATCSPS 498
            T  PL  TT   ++ +A  T A +  S PTS T SPS
Sbjct: 1816 TTFPLINTTGISSMASAQPTTAETTASTPTSITSSPS 1852


>SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18)
          Length = 458

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +1

Query: 388 TCSPLRRTTP--SPN---IPTAASTKASSCRSRPTSATCSPSP 501
           T  PL+ TTP  +P    +P ++  K+SS +  PTS+  SPSP
Sbjct: 384 TVVPLQNTTPPSTPKDLYLPKSSQAKSSS-QMTPTSSQSSPSP 425


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 409 TTPSPN-IPTAASTKASSCRSRPTSATCSPSP 501
           T+PSP+  P+++S+ +SS  S  +S++  PSP
Sbjct: 572 TSPSPSPSPSSSSSSSSSSSSSSSSSSSPPSP 603


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3   EAVYHIRCNPHDIRCLHERGQLQFLQASLLHLPRVPP-SDRLSGATVLV 146
           E VYH   +   ++CL  R +   + A L  L  + P SDR    T++V
Sbjct: 231 ELVYHGEMSRDQMKCLTRRRENSLVSAMLFWLELIQPNSDRQRSITLVV 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,223,939
Number of Sequences: 59808
Number of extensions: 328473
Number of successful extensions: 1219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)