Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0598
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 469 CSC-SSMPWLTLPLECSGLGL 410
           C C +   W T  ++CSGLG+
Sbjct: 765 CKCYNDRTWNTNAVDCSGLGV 785


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 422 GLGVVLLSGEQVQRLPEQHDGDAEQRDEHE 333
           G+G +  +GE V  + E  D D +  D+ +
Sbjct: 375 GVGAMNANGEAVGEVDEDDDDDGDDDDDDD 404


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 415 GLFFLVASRYSGFPSSM 365
           G+ F+   RY G PSS+
Sbjct: 78  GMTFVTVPRYKGVPSSL 94


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 406 FLVASRYSGFPSSMTGMQSSAMN 338
           FL   RY+G PSS+  +     N
Sbjct: 82  FLAVIRYNGVPSSLNVVSDKTGN 104


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 603 EMVLSTYSMVWMAWWIMIS 547
           E  L+  S VW AW ++++
Sbjct: 605 EDALNLSSAVWFAWGVLLN 623


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 357  IPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQ 470
            +   L GKP+ L +  KN      ++GSV  G +   Q
Sbjct: 1196 VTAQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPSQ 1233


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 390  LLATKKNNPKPEHSNGSVNQ 449
            + ATK+ N K    NG +NQ
Sbjct: 1016 ITATKQLNNKARIGNGPINQ 1035


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,382
Number of Sequences: 438
Number of extensions: 2852
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)