Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0598
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 68 6e-12
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila... 65 5e-11
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila... 62 2e-10
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.7
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.6
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 28 6.3
At5g64610.1 68418.m08119 histone acetyltransferase, putative sim... 27 8.4
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1... 27 8.4
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 27 8.4
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 27 8.4
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 27 8.4
>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
to vacuolar proton ATPase 100-kDa subunit from
Dictyostelium discoideum P|1384136|gb|AAB49621
Length = 821
Score = 67.7 bits (158), Expect = 6e-12
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = +2
Query: 509 SSGGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWA 634
+ GGH HE+ FSEI +HQ IHTIE+VL +S+TASYLRLWA
Sbjct: 691 NGGGHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWA 732
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 1 MKLSIIFGVIHMIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKW 174
MK+SI+ GV M G+ MS N FFK +I+ +F+PQ++ KW
Sbjct: 548 MKMSILIGVAQMNLGIIMSFFNAKFFKSAVNIWFQFVPQMIFLNCLFGYLSVLIIIKW 605
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 300 MFDAQSDIQRVFVFIALLCIPVMLLGKPLYL 392
+F Q +Q F+F+AL+ +P MLL KP L
Sbjct: 633 LFPNQKIVQLTFLFLALVSVPWMLLPKPFIL 663
>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 821
Score = 64.9 bits (151), Expect = 5e-11
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +2
Query: 515 GGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWA 634
G H HE+ FSEI +HQ IHTIE+VL +S+TASYLRLWA
Sbjct: 693 GSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWA 732
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 1 MKLSIIFGVIHMIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKW 174
MK+SI+ GV M G+ MS N FFK +I+ +F+PQ++ KW
Sbjct: 547 MKMSILLGVSQMNLGIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLSVLIIIKW 604
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 234 ADPVHQHMLFSKNVPEEGCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYL 392
AD H + + +E + +F Q +Q V +F+AL+ +P MLL KP L
Sbjct: 610 ADLYHVMIYMFLSPMDELGENQLFPHQKTLQLVLLFLALVSVPCMLLPKPFIL 662
>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 817
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2
Query: 515 GGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWA 634
GGH E+ FSEI +HQ IH+IE+VL ++S+TASYLRLWA
Sbjct: 694 GGHHEEEFNFSEIFVHQLIHSIEFVLGSVSNTASYLRLWA 733
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 1 MKLSIIFGVIHMIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKW 174
MK+SI+ G+ M G+ +S N FF I +F+PQ++ KW
Sbjct: 546 MKMSILLGIAQMNLGLILSFFNARFFGSSLDIRYQFIPQMIFLNSLFGYLSLLIIIKW 603
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 394 SPLRRTTPSPNIPTAASTKASSCRSRPTSATCSPSP 501
SP+++ P P P+ TK +S +S P + P P
Sbjct: 617 SPIKKRRPQPPSPSTEETKTTSPQSPPVHSPPPPPP 652
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +3
Query: 219 LRSVGADPVHQHMLFSKNVPEEGCKEFMFDAQSDIQ-RVFVFIALLCIPVMLLGKPLYLL 395
+R + +D V + KN E G EF A D + V V IAL ++ G+P+ +
Sbjct: 278 IRKLFSDCVINSVRLGKN-KETG--EFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKIC 334
Query: 396 ATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKP 500
K+ P +H+ G N + P P
Sbjct: 335 CALKDRPATDHTPGETNNAGSYNMEDTYAAADPVP 369
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
Pfam profile PF00018: SH3 domain
Length = 1196
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 388 TCSPLRRTTPSPNIPTAASTKASSCRSRPTSATCSPSPKL 507
T L P+P + S+ ASS S+PTSA+ S S L
Sbjct: 8 TLMDLISADPTPVPAQSTSSSASSTASQPTSASASSSSHL 47
>At5g64610.1 68418.m08119 histone acetyltransferase, putative
similar to histone acetyltransferase [Homo sapiens]
gi|8317213|gb|AAF72665
Length = 445
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 54 HADTEYHVDYTEYDRQL 4
H D EY+V YTE++R+L
Sbjct: 91 HNDYEYYVHYTEFNRRL 107
>At5g22780.1 68418.m02663 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1013
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 285 GCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQ 464
G ++F D+Q++ I+ C P++ L LL + NP + +G ++ +L
Sbjct: 133 GGRDFAESLAPDVQKLL--ISSSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLL 190
Query: 465 EQTDLG 482
++ DLG
Sbjct: 191 DERDLG 196
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 285 GCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQ 464
G ++F D+Q++ I+ C P++ L LL + NP + +G ++ +L
Sbjct: 133 GGRDFAESLAPDVQKLL--ISSSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLL 190
Query: 465 EQTDLG 482
++ DLG
Sbjct: 191 DERDLG 196
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 285 GCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQ 464
G ++F D+Q++ I+ C P++ L LL + NP + +G ++ +L
Sbjct: 133 GGRDFAESLAPDVQKLL--ISSSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLL 190
Query: 465 EQTDLG 482
++ DLG
Sbjct: 191 DERDLG 196
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 285 GCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQ 464
G ++F D+Q++ I+ C P++ L LL + NP + +G ++ +L
Sbjct: 133 GGRDFAESLAPDVQKLL--ISSSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLL 190
Query: 465 EQTDLG 482
++ DLG
Sbjct: 191 DERDLG 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,637,993
Number of Sequences: 28952
Number of extensions: 229656
Number of successful extensions: 890
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -