Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0597
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.6  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   6.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 435 RGAIILAKLSVLPVRRGYWGNKIGNHTP 518
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 435 RGAIILAKLSVLPVRRGYWGNKIGNHTP 518
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 435 RGAIILAKLSVLPVRRGYWGNKIGNHTP 518
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 435 RGAIILAKLSVLPVRRGYWGNKIGNHTP 518
           R  + +  +++  V  G+W N I  H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 MMRFLRSCLYRNKHVPDSAHVSRHL 363
           +  ++   L + K  PD A + RHL
Sbjct: 43  LKNYVNCLLEKGKCTPDGAELKRHL 67


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 452 KDNSASNGSGDFLAALHTQTNMTVVVANGNK 360
           K NS +NGS D +      ++    + NG+K
Sbjct: 279 KPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 659 ELTCSNPVHQP 627
           E TC  PVH+P
Sbjct: 91  EPTCDEPVHRP 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,172
Number of Sequences: 336
Number of extensions: 3878
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)