Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0597
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 149 2e-36
07_01_0756 + 5819367-5820038,5820847-5821005 144 5e-35
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 84 1e-16
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.9
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 3.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 149 bits (361), Expect = 2e-36
Identities = 70/82 (85%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Frame = +3
Query: 273 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 452
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 453 AKLSVLPVRRGYWGNKIGN-HT 515
AKLSV+PVRRGYWGNKIG HT
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHT 162
Score = 116 bits (278), Expect = 3e-26
Identities = 51/81 (62%), Positives = 61/81 (75%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
+PHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGN
Sbjct: 159 QPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGN 218
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTPD W
Sbjct: 219 FVKATFDCLMKTYGFLTPDFW 239
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/37 (62%), Positives = 33/37 (89%)
Frame = +1
Query: 142 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 144 bits (350), Expect = 5e-35
Identities = 68/82 (82%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
Frame = +3
Query: 273 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 452
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 453 AKLSVLPVRRGYWGNKIGN-HT 515
AKLSV+PVRRGYWGNKIG HT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165
Score = 117 bits (282), Expect = 9e-27
Identities = 52/81 (64%), Positives = 61/81 (75%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGN
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGN 221
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTPD W
Sbjct: 222 FVKATFDCLMKTYGFLTPDFW 242
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = +1
Query: 142 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 503 RKPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 682
RKPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 683 NF 688
NF
Sbjct: 106 NF 107
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 360 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 455
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 288 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 467
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 468 LPV 476
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 422 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 306
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 637 YTSHLKKLLRNWRRHNTSTTRFRNQPDCYGTTLAGDLA 524
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,880,631
Number of Sequences: 37544
Number of extensions: 471452
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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