Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0597
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   141   6e-34
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   8.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  141 bits (341), Expect = 6e-34
 Identities = 69/87 (79%), Positives = 76/87 (87%)
 Frame = +3

Query: 246 QRIEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 425
           +  EIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 426 TAIRGAIILAKLSVLPVRRGYWGNKIG 506
           TAIRGAI+ AKL+V+PVRRGYWGNKIG
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIG 171



 Score =  126 bits (304), Expect = 2e-29
 Identities = 57/80 (71%), Positives = 61/80 (76%)
 Frame = +2

Query: 509 PHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 688
           PHTVPCKVTGKC SV VRLIP PRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLGNF
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNF 232

Query: 689 XXXXXXXXXXXXXXLTPDLW 748
                         LTPDLW
Sbjct: 233 AKATYAALQRTYSYLTPDLW 252



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +1

Query: 145 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKE
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 539 KCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 670
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 539 KCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 670
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 365 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 279
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 365 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 279
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 631 SHLKKLLRNWRRHNTSTTRFRNQPDCYGTTLAGDL 527
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 310  MILRTSSFRDGPRKKSMISIL*LVKKTSKCSRVCRFFLREQDG 182
            +I+    F +G  +   +S+L LVK  SK    CRF + ++ G
Sbjct: 3118 IIIDLKGFHEGSTETLYMSLLNLVKSISKLEIQCRFGVSQEFG 3160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,908
Number of Sequences: 27780
Number of extensions: 377684
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)