Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0597
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 8e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 1e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 2e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 2e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 2e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 2e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g72390.1 68414.m08373 expressed protein 31 1.1
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 4.4
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 4.4
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.8
At3g63100.1 68416.m07087 glycine-rich protein 28 5.8
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 7.6
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (389), Expect = 8e-40
Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 115 bits (276), Expect = 4e-26
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTP+ W
Sbjct: 221 FVKATFDCLQKTYGFLTPEFW 241
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 160 bits (388), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 115 bits (276), Expect = 4e-26
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTP+ W
Sbjct: 230 FVKATFDCLQKTYGFLTPEFW 250
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++++WVPVTKLGRLV G I ++E IYL SLP+KE
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 115 bits (276), Expect = 4e-26
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTP+ W
Sbjct: 229 FVKATFDCLQKTYGFLTPEFW 249
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 115 bits (276), Expect = 4e-26
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTP+ W
Sbjct: 229 FVKATFDCLQKTYGFLTPEFW 249
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 115 bits (276), Expect = 4e-26
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTP+ W
Sbjct: 229 FVKATFDCLQKTYGFLTPEFW 249
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 434
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 435 RGAIILAKLSVLPVRRGYWGNKIGN-HT 515
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 115 bits (276), Expect = 4e-26
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
KPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 686 FXXXXXXXXXXXXXXLTPDLW 748
F LTP+ W
Sbjct: 229 FVKATFDCLQKTYGFLTPEFW 249
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 148 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 252
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 291 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 470
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 471 PV 476
V
Sbjct: 209 QV 210
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 506 KPHTVPCKVTGKCGSVTVRLIPEPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 685
K T P + G G+ V L P GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 725 HMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEVQESA 561
+M+ Q Q+ L Q + QL H+ P+ QPS++ A Q Q Q HE + A
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 540 LPVTLQGTVCGFLSCYPSNLF 478
LP+ LQG + GF+ PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 499 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 320
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 319 CTGMILRTSSFR 284
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 357 AFVAIGDNNGHIGLGVKCSKE 419
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 139 RAHDHGRDHYRVHEDRHGLYLHRVIRXRRENRHVH 35
R H HGRD R H HG + HR R R H H
Sbjct: 111 RDHRHGRD--RGHHRGHGHHHHRGHRRGRGRGHGH 143
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 512 HTVPCKVTGKCGSVTVRL 565
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,331
Number of Sequences: 28952
Number of extensions: 359918
Number of successful extensions: 1009
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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