Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0596
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 5e-29
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10) 33 0.11
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38) 29 1.9
SB_31030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_48227| Best HMM Match : DEAD (HMM E-Value=1.6) 27 7.5
SB_12490| Best HMM Match : DEAD (HMM E-Value=1.6) 27 7.5
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 27 9.9
SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1) 27 9.9
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 124 bits (299), Expect = 5e-29
Identities = 59/74 (79%), Positives = 65/74 (87%)
Frame = +2
Query: 227 QGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 406
+G S YAIRQAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKF
Sbjct: 34 KGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKF 93
Query: 407 GGPGARARYQKSYR 448
GGPGAR+RYQKSYR
Sbjct: 94 GGPGARSRYQKSYR 107
Score = 52.0 bits (119), Expect(2) = 2e-07
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +3
Query: 159 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQV 254
K++EPILLLGKE+F VDIRV VKGGGH +++
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRI 42
Score = 20.6 bits (41), Expect(2) = 2e-07
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3
Query: 33 QAVQVFGRK 59
Q+VQVFGRK
Sbjct: 3 QSVQVFGRK 11
>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
Length = 119
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 236 WSCSTSYAIRQAIS-KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
W + A++ ++AF QKY+D +KE +Q+ + +LV+ R CE
Sbjct: 36 WDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89
>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
Length = 597
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
Q+ W CST+ IR + + L+ ++K +++D +A R +
Sbjct: 282 QAHPSDLWVCSTN-KIRALVQQRLVEHHRKNYPRLPAT------IRFDPDPSIAHHYRKQ 334
Query: 395 PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ PG R +Y+ +G G+ L +Y GW T+ ++
Sbjct: 335 GRPVPVPGKRGEKVDAYKGTVVDVPLGVVLNGLTLEWKYAGWGTVHRVQ 383
>SB_31030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1009
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
Q+ W CST+ + + + L+ ++K +++D VA R +
Sbjct: 843 QAQPSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLPAT------IRFDPDPSVAHRYRKQ 895
Query: 395 PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ PG R SY+ + +G + G+ L +Y GW T+ ++
Sbjct: 896 GRPVPVPGKRGEKVDSYKGTVVEVPLGVFLNGLPLEWKYAGWGTVHRVQ 944
>SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1003
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = +2
Query: 206 G*HQSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 385
G Q+ S W CST+ + + + L+ ++K +++D +A
Sbjct: 743 GIEQAHSSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLPAT------IRFDPDPSIAHRY 795
Query: 386 RCEPKKFGGPGARARYQKSYR*AFKK-TIGWYRRGVVLSLRYIGWCTIKNIK 538
R + + PG R +Y+ + ++G G+ L +Y GW T+ ++
Sbjct: 796 RKQGRPVPVPGKRGEKVDAYKGTVVEVSLGVVLNGLPLEWKYAGWGTVHRVQ 847
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 203 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 117
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1030
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
Q+ W CST+ +R + + L+ ++K +++D VA R +
Sbjct: 864 QAHPSDMWVCSTN-KMRALVQQRLVEHHRKNYPRLPAT------IRFDPDPSVAHRYRKQ 916
Query: 395 PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
PG R +Y+ + +G G+ L +Y GW T+ ++
Sbjct: 917 GWPVPAPGKRGEKVDAYKGTVVEVPLGVVLNGLPLERKYAGWGTVHRVQ 965
>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 95 SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 208
SW A K+ P G G ++ +G Y R G+ YG
Sbjct: 19 SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56
>SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = +2
Query: 212 HQSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 391
H SD W CST+ + + + L+ +++K +++D VA R
Sbjct: 958 HPSDM---WVCSTN-KMGALVQQRLVEYHRKNYPRLPAT------IRFDPDPSVAHRYRK 1007
Query: 392 EPKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ + PG R +Y+ + +G G+ L +Y GW T+ ++
Sbjct: 1008 QGRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 1057
>SB_48227| Best HMM Match : DEAD (HMM E-Value=1.6)
Length = 362
Score = 27.5 bits (58), Expect = 7.5
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIK-DILVQYDRSLLVADPRRC 391
Q+ W CST+ K F Q+ V+ K + +++D VA R
Sbjct: 216 QAHPSDMWVCSTN--------KIGALFQQRLVEHHRKNYPRLPATIRFDPDPSVAHRYRK 267
Query: 392 EPKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ + PG R +Y+ + +G G+ L +Y GW T+ ++
Sbjct: 268 QGRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 317
>SB_12490| Best HMM Match : DEAD (HMM E-Value=1.6)
Length = 445
Score = 27.5 bits (58), Expect = 7.5
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIK-DILVQYDRSLLVADPRRC 391
Q+ W CST+ K F Q+ V+ K + +++D VA R
Sbjct: 216 QAHPSDMWVCSTN--------KIGALFQQRLVEHHRKNYPRLPATIRFDPDPSVAHRYRK 267
Query: 392 EPKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ + PG R +Y+ + +G G+ L +Y GW T+ ++
Sbjct: 268 QGRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 317
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
Q+ W CST+ + + + L+ ++K + +++D VA R +
Sbjct: 856 QAHPSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLTAT------IRFDPDPSVAHRYRKQ 908
Query: 395 PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ PG R +Y+ + +G G+ L +Y GW T+ ++
Sbjct: 909 GRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 957
>SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1115
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = +2
Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
Q+ W CST+ + + + L+ ++K + +++D VA R +
Sbjct: 919 QAHPSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLTAT------IRFDPDPSVAHRYRKQ 971
Query: 395 PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
+ PG R +Y+ + +G G+ L +Y GW T+ ++
Sbjct: 972 GRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 1020
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,115,651
Number of Sequences: 59808
Number of extensions: 403545
Number of successful extensions: 1160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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