Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0595
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    25   0.47 
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    25   0.47 
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    25   0.47 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   1.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.8  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 150 SPPNSGKQAFFPRRFSKRVMFCLRCGRFLDE 58
           S P     AF P  F+KR  F ++C    D+
Sbjct: 29  SSPAGRSPAFLPHHFTKRSFFDIQCKGVYDK 59


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 150 SPPNSGKQAFFPRRFSKRVMFCLRCGRFLDE 58
           S P     AF P  F+KR  F ++C    D+
Sbjct: 29  SSPAGRSPAFLPHHFTKRSFFDIQCKGVYDK 59


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 150 SPPNSGKQAFFPRRFSKRVMFCLRCGRFLDE 58
           S P     AF P  F+KR  F ++C    D+
Sbjct: 29  SSPAGRSPAFLPHHFTKRSFFDIQCKGVYDK 59


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 658 ASSESNKTFKALFSGSPL 605
           AS+  NKTFK+  +G+P+
Sbjct: 135 ASAGINKTFKSTLTGTPV 152


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = +1

Query: 328 RPLIPTPDNFTCAYDYTNVYYGNNGTLACLNDPTTDIAVLSTENINVHLQALGLQANQFR 507
           RP++P P N+  +Y ++     NN        P   +A+     I    ++  + A +  
Sbjct: 33  RPMLPYPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSPILAEKVS 92

Query: 508 ASVRTTRSP 534
            S  T  +P
Sbjct: 93  VSPTTPPTP 101


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 237 NSPTAFT*SHSVSLITPRSWAVRTNATYASPPN 139
           NSP +F+     SL++P       ++T   PPN
Sbjct: 44  NSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPN 76


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 331 PLIPTPDNFTCAYDYTNVYYGNNGTLACLNDPTTDIAVLSTENINVHLQAL 483
           P  P  D+   A +Y+ +       +A  N P+ D ++ STE +  ++Q L
Sbjct: 254 PAAPGGDSQQAALNYSTLA----SAVASANGPSQDPSISSTETLLRNIQGL 300


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 191 RPAAGRCARTRRTQ 150
           RP++GR  RTRR +
Sbjct: 202 RPSSGRSPRTRRVK 215


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 DRMRLCESCGRVFRRR 249
           +R   C+ CG+ FRR+
Sbjct: 105 ERPYSCDICGKAFRRQ 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,707
Number of Sequences: 336
Number of extensions: 3730
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)