Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0595
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    29   0.89 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   4.8  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   6.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   6.3  

>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 430 TDIAVLSTENINVHLQALGLQANQFRA 510
           ++IAV+   N+N+ L A+GL A Q  A
Sbjct: 718 SEIAVVRISNVNLFLNAMGLDARQLSA 744


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 101 FENLRGKKACFPEFGGLAYVAFVRTAQLRGVISETECD 214
           F+N+ G+ +C P FGG+     +R     G +    CD
Sbjct: 49  FDNI-GQMSCNPAFGGIGKGTLMREIDALGGVVSGVCD 85


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 89  NITRFENLRGKKACFPEFGGLAYVAFVRTAQLRGVISETECDY-VKAVGEFF 241
           N TRF +L  +KA F EFG  +  +F +  +L  +  ET  D  VK  G+ F
Sbjct: 52  NSTRFADLIIEKATFTEFGNTS--SFPKFLKL-DISYETSSDLEVKRKGQMF 100


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 280 TITETTFNATSLCSVCRPLIPTPDNFTCAYDYTNVYYGNNGT 405
           T  + T N  S  S  R    T   F+   DYT+VYY   GT
Sbjct: 88  TSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGT 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,077
Number of Sequences: 5004
Number of extensions: 60733
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)