Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0595
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 30 1.6
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257... 29 2.8
02_04_0075 - 19481431-19481434,19482388-19482755 29 3.8
12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691 29 5.0
03_02_0660 + 10244962-10245606 29 5.0
12_01_0265 + 1932529-1932545,1932578-1932785,1933254-1933333,193... 28 6.6
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 28 6.6
03_02_0661 + 10247128-10247895 28 6.6
09_02_0226 - 6007656-6008063,6012166-6012678 28 8.7
01_05_0554 + 23221374-23222017,23222158-23222296 28 8.7
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 357 KVIRCGDEWPAYRTQRGRVEGGFRDGVRGVQCSRA 253
++ R G W A R+ RGR GG R G RG A
Sbjct: 143 RIRRWGLRWLARRSSRGRSGGGVRGGGRGAAADPA 177
>01_01_0319 -
2574583-2574675,2575853-2576055,2576140-2576364,
2576590-2576603,2577146-2577210
Length = 199
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 454 PCSALRCPWSDRSDTLEYRCCHNKRSY 374
P A RC W + T +YR C +RSY
Sbjct: 173 PRVARRCRWCEEYTTHDYRNCPQRRSY 199
>02_04_0075 - 19481431-19481434,19482388-19482755
Length = 123
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 49 VAAFVKETAAAQAEHHALREPSRKEGLLPRIWRACVRRVRAHRPAAGRD 195
V + A+ H ALR S+K G L ++W V V A P A R+
Sbjct: 43 VIGSIHHLASNPNTHRALRALSQKHGPLMQLWLGEVPAVVASTPEAARE 91
>12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691
Length = 461
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 88 EHHALREPSRKEGLLPRIWRACVRRVRAHRPAAGRDQR 201
+H + PS+K+ + IW+A R+V A R + R +R
Sbjct: 416 KHFEYQYPSQKDDAVQMIWQALARKVPAIRLKSHRSRR 453
>03_02_0660 + 10244962-10245606
Length = 214
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 112 SRKEGLLP-RIWRACVRRVRAHRPAAGRDQRDRMRLCESCGRVFRRRLR 255
+R G LP + WRA V A R AAGR C + + + R +
Sbjct: 38 ARSRGPLPAKDWRAAASAVNARRAAAGRRHNRTRAQCRARVQTLKERYK 86
>12_01_0265 +
1932529-1932545,1932578-1932785,1933254-1933333,
1933394-1933916
Length = 275
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +1
Query: 172 HRPAAGRDQRDRMRLCESCGRVFRRRLRPGALDASHTITETTFNATSLCSVCRPLIP 342
HRP G +R C C + F ++ SHT + C VC P P
Sbjct: 207 HRPRVGSKTAERS--CSVCLKNFEEDDYIWSMPCSHTFHQLCVLGDRSCRVCHPAAP 261
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 208 MRLCESCGRVFRRRLRPGALDASHTITETTFNATSLCSVCRPLIPTPDNFTCAYDYTNVY 387
+ L S G FRRRLRPGA + T S S P+ D F D
Sbjct: 63 LHLHRSGGSSFRRRLRPGAAGEA----GTPLGGVSYVST--PIPDDDDAFDVGADRLETL 116
Query: 388 YGN---NGTLACLNDPTTDIAVLSTENINV 468
Y N NG L + IA++ + +
Sbjct: 117 YSNIEMNGQYKVLTYSSNTIALMQQGGLRI 146
>03_02_0661 + 10247128-10247895
Length = 255
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 142 WRACVRRVRAHRPAAGRDQRDRMRLCESCGRVFRRRLR 255
WRAC V A R AAGR R + C++ ++RL+
Sbjct: 50 WRACAAAVTARRAAAGRAPR-TVDQCKNRLDYLKKRLK 86
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +2
Query: 455 RTSMFTYKR*DC-KPISSVPLSEQHARRDAWRVH*RQLSPSLRCRRGGSVQKRRPAEQRF 631
RT YKR C KP + + A R WR H + C G + +R +
Sbjct: 224 RTLQTHYKRKHCAKPFACRKCGKPLAVRGDWRTHEKNCGRRWHCACGSDFKHKRSLKDHI 283
Query: 632 ERFIR 646
F R
Sbjct: 284 RAFGR 288
>01_05_0554 + 23221374-23222017,23222158-23222296
Length = 260
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 147 PPNSGKQAFFPRRFSKRVM-FCLRCGRFLDEGRD 49
P S + P R + +M FC CG L+EG+D
Sbjct: 177 PDESKSEESLPPRLEEGMMSFCYFCGEKLEEGKD 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,120,929
Number of Sequences: 37544
Number of extensions: 484048
Number of successful extensions: 1528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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