Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0595
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 42 7e-04
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_59462| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 31 1.3
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 30 2.2
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 3.3
SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05) 29 3.8
SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 29 5.1
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 29 5.1
SB_36572| Best HMM Match : CBM_19 (HMM E-Value=0.54) 28 6.7
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 28 8.9
SB_23657| Best HMM Match : Sushi (HMM E-Value=0) 28 8.9
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/82 (31%), Positives = 36/82 (43%)
Frame = +1
Query: 196 QRDRMRLCESCGRVFRRRLRPGALDASHTITETTFNATSLCSVCRPLIPTPDNFTCAYDY 375
QR + S G F + PG DA++ + T SLC C N TC D
Sbjct: 161 QRKDCDVYNSAGEFFGKSCVPGVFDAANNLNNTKL--PSLCGAC-------SNPTCPGDE 211
Query: 376 TNVYYGNNGTLACLNDPTTDIA 441
+ YYG NG+ CL + ++A
Sbjct: 212 SERYYGYNGSYVCLVEGRGEVA 233
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 252 QAPSKNSPTAFT*SHSVSLITPRSWAVRTNATYASPPNSGKQA 124
+A + NSPT+ T SVS+ + R+ N+T A PP KQ+
Sbjct: 640 EAKTPNSPTSKTPEVSVSISSSRAEVAGDNSTLAKPPLQRKQS 682
>SB_59462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 269 SNAPGRRRRRKTLPQLSHNRILSR*SRPAAGRCARTRRTQALQILGSRPSFLE 111
S R+++R+ P +R+ P C R +R Q + GS +FLE
Sbjct: 71 STLNNRKKKRRKNPNEEESRVFQEHFFPEPSHCTRDKRIQVNLLEGSEKNFLE 123
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 0.95
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -2
Query: 681 PPCCNRSTRPANRIKRSKRCSAGRLFWTE-PPRR--QRKLGDSCRQ*TRQASRRACCSDR 511
PP CN RP IK CS +L + PR+ Q+ CR+ CCS++
Sbjct: 1975 PPSCNLICRPDCMIKC---CSGSKLVQIDVSPRKRTQKSCPQPCRRSCNPECPVECCSEK 2031
Query: 510 GTELIGLQ 487
E GL+
Sbjct: 2032 EIEKFGLR 2039
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Frame = +1
Query: 217 CESCGRVFRRRLRPGALDASHTITETTFNATSLCSVCR----PLIPTPDNFTCAYDYTNV 384
C + + R RP + + T + S+ R P+ TP T N
Sbjct: 406 CHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTPITTTITNHRLNC 465
Query: 385 YYGNNGTLACLNDPTTDIAVLSTENINVHLQALGLQANQFRASVRTTRSPRRLAC 549
+ N+G L+ P ++ +N H ++ L + + A + TT + RL C
Sbjct: 466 HT-NSGILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNC 519
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Frame = +1
Query: 217 CESCGRVFRRRLRPGALDASHTITETTFNATSLCSVCR----PLIPTPDNFTCAYDYTNV 384
C + + R RP + + T + S+ R P+ TP T N
Sbjct: 554 CHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTPITTTITNHRLNC 613
Query: 385 YYGNNGTLACLNDPTTDIAVLSTENINVHLQALGLQANQFRASVRTTRSPRRLAC 549
+ N+G L+ P ++ +N H ++ L + + A + TT + RL C
Sbjct: 614 HT-NSGILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNC 667
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 253 RPGALDASHTITETTFNATSLCSVCRPLIPT-PDNFTCA 366
+PG + HT ++ ++C +C+ L+ T ++ +CA
Sbjct: 209 KPGRIQVPHTFAVHSYKKPTMCQICKRLVRTLKEHISCA 247
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 30.3 bits (65), Expect = 1.7
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Frame = +1
Query: 76 AAQAEHHALREPS-RKEGLLPRIWRACVRRVRAHRPAAGRDQRDRMRLCESCGRVFRRRL 252
A Q +H L+E R +G+L R V++ R R A G S +F +
Sbjct: 1324 AEQLQHEELKEKKMRMKGMLER-----VQQQRDARGAGGLGNVS----APSTPVLFDMLV 1374
Query: 253 RPGALDASHTITETTFNATSLCSVCRPLIPTPDNFTCA--YDYTNVYYGNNGTLACLNDP 426
G+ S T T++T T+L + L+P PDN C+ + N+ + G ++
Sbjct: 1375 ISGSKGGSKTNTDST-TYTALLTWLLSLVPVPDNLNCSDLAQWENIPFHVIGLQQTWHEG 1433
Query: 427 TTDIAVLSTENINVHLQALGLQANQFRASV 516
+ V ++V Q G N F A+V
Sbjct: 1434 QLSLIVGIRNRVDVRKQGKG---NSFLATV 1460
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 283 WC-ERRPMLPGAG-AVEKLSHSFHIIAFCLADHAPQLGGAHER 161
WC +RR P G + K + + H CL +H PQ G+++R
Sbjct: 47 WCGDRRGPHPWNGKSCSKCAGNDHFARVCLEEHNPQASGSNQR 89
>SB_46608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +3
Query: 477 SVRTASQSVPCLCQNNTLAATPGVFIDDNCLLAYVVDAEVLSRRGDPLNNALNVLFDSLD 656
S+ S S+ C +N A + NC+ A LS D L+N+++ +S+D
Sbjct: 43 SIEALSNSIDAPCNSND-AFCDSIDALSNCIEALCNSINALSNSIDALSNSIDAFSNSID 101
Query: 657 AYFGYNTAAANQL 695
A A N +
Sbjct: 102 ALCNSIDALCNSI 114
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 283 WC-ERRPMLPGAG-AVEKLSHSFHIIAFCLADHAPQLGGAHER 161
WC +RR P G + K + + H CL +H PQ G+++R
Sbjct: 225 WCGDRRGPHPWNGKSCSKCAGNDHFARVCLEEHNPQASGSNQR 267
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 24.6 bits (51), Expect(2) = 3.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 217 CESCGRVFRR 246
CE CGR+FRR
Sbjct: 806 CEECGRLFRR 815
Score = 23.0 bits (47), Expect(2) = 3.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 169 AHRPAAGRDQRDRMRLCESCGRVFR 243
A AA R + R+CE C + F+
Sbjct: 762 ARNAAAKRKLSNGPRICEECNKAFK 786
>SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
Length = 374
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 247 RLRPGALDASHTITETTFNATSLCSVCRPLIPTPDNFTCAYDYTNVYYGNNGTLACLNDP 426
+L A+ ASH +A L + P+ TP+NF C YD + +C +P
Sbjct: 11 QLALNAVSASHFSLTLLIHA--LATSGEPIFSTPENFNCKYDKYEICGNLTDDASCHCEP 68
>SB_36331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 262 ALDASHTITETTFNATSLCSVCRPLIPTPDNFTCAY 369
AL+ S I +A ++ S C P + TP ++ CAY
Sbjct: 2 ALETSSLIEFFLLSAKTIVSSCLPTLLTPRDYPCAY 37
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +3
Query: 297 LQRDLVVFCMQATHPHT*XXXXXXXXXXXXXWQQRYSSVSERSDHGHRSAEHGEHQCSLT 476
LQ++ V++C A+ H WQ R S+ R++ R+A + C+L
Sbjct: 546 LQQNRVLYCGTASRKHKKIINFSFDRYRCQRWQ-RDSNDRRRAN---RAAYGNQSHCTLY 601
Query: 477 SVRTASQSVPCLCQNNTLAATP 542
+ R SQ++ C + + TP
Sbjct: 602 TQRENSQALKCDSASRAMYITP 623
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +1
Query: 286 TETTFNATSLCSVCRPLIPTPDNFTCAYDYTNVYYGNNGTLACLNDPTTDIAVLSTENIN 465
T+T ++LCS+ I TP +T + G T+A + DP T A +E
Sbjct: 459 TQTDKPQSTLCSIHGKTITTPSQYTRQASLP-IMVGQPATMASI-DPETQSAGGQSEGTL 516
Query: 466 VHLQALG 486
V QA+G
Sbjct: 517 VTSQAMG 523
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 133 PRIWRACVRRVRAHRPAAGRDQRDRMRLCESCGRVFRRRLR-PGA 264
PR +R + ++ AH P A +D + + SC RVF R PG+
Sbjct: 205 PRAYRPSMCQMAAHGPTAFQDPQSQASPPGSCSRVFLPTARVPGS 249
>SB_36572| Best HMM Match : CBM_19 (HMM E-Value=0.54)
Length = 166
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 328 RPLIPTPDNFTCAY-DYTNVYYGNNGTLACLNDP-TTDIAVLSTENINVH 471
RP + + NFT +YT Y N G + C +DP I+ + T ++ +H
Sbjct: 107 RPTV-SDHNFTATIPNYTQCNYTNGGWVNCSSDPFAVTISSVDTGHVGLH 155
>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 241 RRRLRPGALDASHTITETTFN 303
R RL+P DASHTIT T N
Sbjct: 83 RERLQPIGADASHTITHDTNN 103
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 258 GSIGRLSHHHGNHLQRDLVVFCMQATHPH 344
G++ R++H H NH+++ +ATH H
Sbjct: 128 GNMARVTHRHLNHVRKGRTEDMARATHRH 156
>SB_23657| Best HMM Match : Sushi (HMM E-Value=0)
Length = 331
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +1
Query: 100 LREPSRKEGLLPRIWRACVRRVRAHRPAAGRDQRDRMRLCESCGRVFR 243
LRE +RKE L P ++ + H GRD R R R+ SC R FR
Sbjct: 94 LREKARKE-LAPCASPGNLKNGKVH----GRDFRHRKRVSFSCNRGFR 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,441,201
Number of Sequences: 59808
Number of extensions: 514304
Number of successful extensions: 1546
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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