Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0595
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell l...    33   0.27 
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    33   0.27 
AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.     33   0.27 
Z48367-3|CAE17722.1|  194|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U23454-9|AAC46522.2|  249|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81586-3|CAB04691.1|  203|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform c protein.
          Length = 453

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 468 NIDVLRAQHCDVRGRIVQTR*STVVAIINVRIIISAGKVIRCGDEWPAY 322
           ++ V+R  H D+      +R   V +I ++R++   G ++RC  EW AY
Sbjct: 210 DVHVVRQAHIDLHN----SRGKIVKSIADLRLVAHNGSILRCQTEWSAY 254


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 468 NIDVLRAQHCDVRGRIVQTR*STVVAIINVRIIISAGKVIRCGDEWPAY 322
           ++ V+R  H D+      +R   V +I ++R++   G ++RC  EW AY
Sbjct: 210 DVHVVRQAHIDLHN----SRGKIVKSIADLRLVAHNGSILRCQTEWSAY 254


>AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.
          Length = 453

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 468 NIDVLRAQHCDVRGRIVQTR*STVVAIINVRIIISAGKVIRCGDEWPAY 322
           ++ V+R  H D+      +R   V +I ++R++   G ++RC  EW AY
Sbjct: 210 DVHVVRQAHIDLHN----SRGKIVKSIADLRLVAHNGSILRCQTEWSAY 254


>Z48367-3|CAE17722.1|  194|Caenorhabditis elegans Hypothetical
           protein C33B4.5 protein.
          Length = 194

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 243 SKNSPTAFT*SHSVSLITPRSWAVRTNATYASPPNSGKQAFFPRRFSKR 97
           S+   T  T   SV  +TP+SWA  T A+ AS  ++    F P RF ++
Sbjct: 133 SRVETTTTTPKPSVPAVTPKSWAKTTTAS-ASGYSAEPALFLPSRFHRK 180


>U23454-9|AAC46522.2|  249|Caenorhabditis elegans Hypothetical
           protein C10A4.8 protein.
          Length = 249

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 217 CESCGRVFRRRLRPGALDASHTITETTFNATSLCSVCRPLIPTPDNF-TCAYDYTNV 384
           CE CGR FR   +PG L   H +T TT     +C +C        N  T    +TNV
Sbjct: 198 CEHCGRAFR---QPGNL-TRHRLTHTTVK-PYVCGLCDKAFNRASNLHTHMRTHTNV 249


>AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical
           protein T12B5.10 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +1

Query: 322 VCRPLIPTPDNFTCAYDYTNVYYGNNGTLACLNDPTTDIAVLSTENINV 468
           VCR L    D F   +D  N++ G +    C+   T      +  N NV
Sbjct: 82  VCRSLRTAVDKFGLRFDQINLFLGRDNVEICMRGTTIRYTTAANGNSNV 130


>Z81586-3|CAB04691.1|  203|Caenorhabditis elegans Hypothetical
           protein T05F1.4 protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 321 RTQRGRVEGGFRDGVRGVQCSRAQAPSKNS 232
           R +RG   GGFRD +R  Q  R  +P + S
Sbjct: 19  RGRRGGGNGGFRDDIRDNQSDRHLSPDRRS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,742,095
Number of Sequences: 27780
Number of extensions: 363593
Number of successful extensions: 1064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)