Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0595
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 34 0.083
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 32 0.45
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 32 0.45
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat... 31 0.78
At5g20610.1 68418.m02448 expressed protein 31 1.0
At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A... 29 4.1
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 4.1
At1g15780.1 68414.m01893 expressed protein 29 4.1
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 28 5.5
At1g79110.2 68414.m09225 expressed protein 27 9.6
At1g79110.1 68414.m09224 expressed protein 27 9.6
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -2
Query: 186 RSWAVRTNATYASPPNSGKQAFFPRRFSKRVMFCLRCGRFLDEGRD 49
R WA TN T P N+ K FFP MF G F++ G D
Sbjct: 104 RKWANETNFTIRRPDNTSKYVFFPEVCG--TMFDSHYGFFIENGED 147
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 351 IRCGDEWPAYRTQRGRVEGGFRDGVRG 271
I CG +WP R +G EGG RG
Sbjct: 802 IMCGGDWPLLRVMKGIFEGGLESANRG 828
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 351 IRCGDEWPAYRTQRGRVEGGFRDGVRG 271
I CG +WP R +G EGG RG
Sbjct: 802 IMCGGDWPLLRVMKGIFEGGLESADRG 828
>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 853
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 325 CRPLIPTPDNF--TCAYDYTNVYYGNNGTLACLNDPTTDIAVLSTEN 459
C+P + T NF C + Y NN T+ CLN I +++ EN
Sbjct: 182 CKPTVYT-QNFERACPLAHIYAYDDNNSTVTCLNSTDYVITIITIEN 227
>At5g20610.1 68418.m02448 expressed protein
Length = 1164
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 186 RSWAVRTNATYASPPNSGKQAFFPRRFSKRVMFCL 82
R W + N SPP++G+ AF P F + F L
Sbjct: 667 REWGMNENTFQNSPPHNGRDAFHPADFPVKEPFDL 701
>At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 510
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 390 WQQRYSSVSER--SDHGHRSAEHGEHQCSLTSVRTASQS 500
W+Q S + + S H HR EHG H S + AS S
Sbjct: 2 WKQILSKLPNKKSSKHEHRGREHGGHSSSSSHTSGASTS 40
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 297 GGFRDGVRGVQCSRAQAPSKNSPTAFT*SHSVSLITPRSWAVRTNATYASPP 142
GGFR+ RGV S P+ SP ++SL R V + SPP
Sbjct: 194 GGFREFQRGVSSSWISGPTYYSPAMTANDLNISLDHGRRGLVSSAVPNLSPP 245
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 169 HERDVRKPSKFWEAGLLSSKVLE 101
H +DV +P KFW L+SK+L+
Sbjct: 520 HGKDVPRPIKFWHQTGLTSKILD 542
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/87 (22%), Positives = 37/87 (42%)
Frame = +3
Query: 393 QQRYSSVSERSDHGHRSAEHGEHQCSLTSVRTASQSVPCLCQNNTLAATPGVFIDDNCLL 572
QQ S + H +++ + + A QS Q+N L++ PGV +
Sbjct: 703 QQPQSQTVQDQSHDNQTNPQMQSMSMQGAGPRAQQSSMTNMQSNVLSSRPGVSAPQQNIP 762
Query: 573 AYVVDAEVLSRRGDPLNNALNVLFDSL 653
+ + + + S +G+ LNN V S+
Sbjct: 763 SSIPASSLESGQGNTLNNGQQVAMGSM 789
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 364 AYDYTNVYYGNNGTLACLNDPTTDIAVLSTENINVHLQALGLQANQFRASVRTTRS 531
A +Y N+YYG N + A + L + H Q L NQFR+S + S
Sbjct: 254 AEEYRNIYYGANSSNASPHHQYNQFKTLLANSSQHHHQVL----NQFRSSPAASSS 305
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 157 RRVRAHRPAAGRDQRDRMRLCESCG 231
RRV R A + +R R R+C +CG
Sbjct: 287 RRVGLEREAQDKAERRRRRMCRNCG 311
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 157 RRVRAHRPAAGRDQRDRMRLCESCG 231
RRV R A + +R R R+C +CG
Sbjct: 290 RRVGLEREAQDKAERRRRRMCRNCG 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,798
Number of Sequences: 28952
Number of extensions: 344385
Number of successful extensions: 994
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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