Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0594
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   130   2e-31
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   130   2e-31
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  130 bits (315), Expect = 2e-31
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 181
           F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62

Query: 182 QVAYSRIEGDHIVCAAYSHELPRY 253
           Q+  SR+ GD+++  A+S ELPRY
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPRY 86



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 36/78 (46%), Positives = 53/78 (67%)
 Frame = +3

Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
           +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ 
Sbjct: 173 IPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIE 232

Query: 690 ADAIEAIYKKAHEAIRAD 743
           +D +E IY +A+  IR D
Sbjct: 233 SDQLEDIYAEAYAKIRED 250



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 35/84 (41%), Positives = 45/84 (53%)
 Frame = +1

Query: 256 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLD 435
           +K GL N+ AAY+TG                              E +++GP  F+ +LD
Sbjct: 88  IKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLD 147

Query: 436 VGLARTTTGARVFGAMKGAVDGGL 507
           VGL RT+TG+RVFGAMKGA DGGL
Sbjct: 148 VGLKRTSTGSRVFGAMKGASDGGL 171


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  130 bits (315), Expect = 2e-31
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 181
           F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62

Query: 182 QVAYSRIEGDHIVCAAYSHELPRY 253
           Q+  SR+ GD+++  A+S ELPRY
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPRY 86



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 36/78 (46%), Positives = 53/78 (67%)
 Frame = +3

Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
           +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ 
Sbjct: 173 IPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIE 232

Query: 690 ADAIEAIYKKAHEAIRAD 743
           +D +E IY +A+  IR D
Sbjct: 233 SDQLEDIYAEAYAKIRED 250



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 35/84 (41%), Positives = 45/84 (53%)
 Frame = +1

Query: 256 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLD 435
           +K GL N+ AAY+TG                              E +++GP  F+ +LD
Sbjct: 88  IKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLD 147

Query: 436 VGLARTTTGARVFGAMKGAVDGGL 507
           VGL RT+TG+RVFGAMKGA DGGL
Sbjct: 148 VGLKRTSTGSRVFGAMKGASDGGL 171


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 606  AEYMRSLEQDDEDSFKRQFSKYIK 677
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,928
Number of Sequences: 5004
Number of extensions: 62045
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)