Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0594
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 121 5e-28
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 119 3e-27
04_04_0232 + 23794109-23794399,23795290-23796621 29 5.2
02_04_0381 - 22497519-22497769,22498157-22498247 28 6.8
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 9.0
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 121 bits (292), Expect = 5e-28
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = +2
Query: 2 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 181
FVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 4 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITA 60
Query: 182 QVAYSRIEGDHIVCAAYSHELPRY 253
Q+ Y+ I GD ++ AAYSHELPRY
Sbjct: 61 QIVYATIAGDIVMAAAYSHELPRY 84
Score = 96.3 bits (229), Expect = 2e-20
Identities = 37/78 (47%), Positives = 60/78 (76%)
Frame = +3
Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
+PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+
Sbjct: 170 IPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGID 229
Query: 690 ADAIEAIYKKAHEAIRAD 743
AD +E++YKK H AIRAD
Sbjct: 230 ADGMESLYKKVHAAIRAD 247
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/84 (48%), Positives = 46/84 (54%)
Frame = +1
Query: 256 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLD 435
++VGLTNYAAAY TG +Y VEP D FR LD
Sbjct: 86 LEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLD 144
Query: 436 VGLARTTTGARVFGAMKGAVDGGL 507
VGL RTTTG RVFGA+KGA+DGGL
Sbjct: 145 VGLIRTTTGNRVFGALKGALDGGL 168
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 119 bits (286), Expect = 3e-27
Identities = 55/84 (65%), Positives = 64/84 (76%)
Frame = +2
Query: 2 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 181
FVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 4 FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITA 60
Query: 182 QVAYSRIEGDHIVCAAYSHELPRY 253
Q+ Y+ I GD ++ AAYSHELPRY
Sbjct: 61 QIVYATIAGDIVMAAAYSHELPRY 84
Score = 97.5 bits (232), Expect = 1e-20
Identities = 38/78 (48%), Positives = 60/78 (76%)
Frame = +3
Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
+PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+
Sbjct: 170 IPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGID 229
Query: 690 ADAIEAIYKKAHEAIRAD 743
AD +EA+YKK H AIRAD
Sbjct: 230 ADGMEALYKKVHAAIRAD 247
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/84 (48%), Positives = 46/84 (54%)
Frame = +1
Query: 256 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLD 435
++VGLTNYAAAY TG +Y VEP D FR LD
Sbjct: 86 LEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLD 144
Query: 436 VGLARTTTGARVFGAMKGAVDGGL 507
VGL RTTTG RVFGA+KGA+DGGL
Sbjct: 145 VGLIRTTTGNRVFGALKGALDGGL 168
>04_04_0232 + 23794109-23794399,23795290-23796621
Length = 540
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 177 HARWPTL--GL--KVTILCALLIHMSCHVMCEGW 266
H RW L GL +V LCAL + SC +C W
Sbjct: 106 HRRWADLHAGLVSRVADLCALRGYASCRAVCASW 139
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 243 CHVMCEGWSDKLCCSIFNWSAISTKTASK 329
C C+G+ DK CC +WS K SK
Sbjct: 87 CKHYCDGYDDKSCCD--DWSGDCHKCCSK 113
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 122 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 244
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,622,152
Number of Sequences: 37544
Number of extensions: 402970
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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