Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0594
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             132   3e-31
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         101   8e-22
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   32   0.56 
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    32   0.56 
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      30   2.3  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  132 bits (319), Expect = 3e-31
 Identities = 59/78 (75%), Positives = 69/78 (88%)
 Frame = +3

Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
           +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+KRQFS YIK GV 
Sbjct: 205 IPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIKNGVD 264

Query: 690 ADAIEAIYKKAHEAIRAD 743
           AD+IE IYK AH+AIRAD
Sbjct: 265 ADSIEGIYKAAHQAIRAD 282



 Score =  101 bits (242), Expect = 6e-22
 Identities = 51/84 (60%), Positives = 54/84 (64%)
 Frame = +1

Query: 256 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLD 435
           VKVGLTNYAAAY TG                          EYNVE VD  PGAFRC+LD
Sbjct: 120 VKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLD 179

Query: 436 VGLARTTTGARVFGAMKGAVDGGL 507
           VGLART+TGARVFGA+KGAVDGGL
Sbjct: 180 VGLARTSTGARVFGALKGAVDGGL 203



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +2

Query: 59  RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 184
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  101 bits (241), Expect = 8e-22
 Identities = 50/84 (59%), Positives = 54/84 (64%)
 Frame = +1

Query: 256 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLD 435
           VKVGLTNYAAAY TG                          EYNVE +D  PGAFRC+LD
Sbjct: 25  VKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCFLD 84

Query: 436 VGLARTTTGARVFGAMKGAVDGGL 507
           VGLART+TGARVFGA+KGAVDGGL
Sbjct: 85  VGLARTSTGARVFGALKGAVDGGL 108



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 16/23 (69%), Positives = 22/23 (95%)
 Frame = +2

Query: 185 VAYSRIEGDHIVCAAYSHELPRY 253
           +AY+++EGD I+CAAY+HELPRY
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRY 23


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 536 RESFDGMRNMRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 396
           R +++    MRP    PF+ P +RAP    A PT+      P P S+
Sbjct: 347 RNAYNPHAMMRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 536 RESFDGMRNMRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 396
           R +++    MRP    PF+ P +RAP    A PT+      P P S+
Sbjct: 213 RNAYNPHAMMRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 543 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 677
           D+  K+ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 146 LIVRLSNKDVTCQVAYSRIEGD-HIVC 223
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 14  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 109
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,124,067
Number of Sequences: 59808
Number of extensions: 493047
Number of successful extensions: 1476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)