Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0594
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   122   2e-28
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   122   3e-28
At5g60120.1 68418.m07537 AP2 domain-containing transcription fac...    28   5.7  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   5.7  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   5.7  
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    27   9.9  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  122 bits (295), Expect = 2e-28
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +2

Query: 2   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 181
           FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 182 QVAYSRIEGDHIVCAAYSHELPRY 253
           Q+  + I GD +  +AY+HELP+Y
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQY 86



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 40/78 (51%), Positives = 57/78 (73%)
 Frame = +3

Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
           +PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK GV 
Sbjct: 172 IPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVE 231

Query: 690 ADAIEAIYKKAHEAIRAD 743
           A++IE +YKK H AIRAD
Sbjct: 232 AESIEELYKKVHAAIRAD 249



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 40/82 (48%), Positives = 46/82 (56%)
 Frame = +1

Query: 262 VGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVG 441
           VGLTNYAAAY TG                          +++VEP D+    FR  LDVG
Sbjct: 90  VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVG 148

Query: 442 LARTTTGARVFGAMKGAVDGGL 507
           L RTTTG RVFGA+KGA+DGGL
Sbjct: 149 LIRTTTGNRVFGALKGALDGGL 170


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  122 bits (293), Expect = 3e-28
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +2

Query: 2   FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 181
           FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 182 QVAYSRIEGDHIVCAAYSHELPRY 253
           Q+  + I GD +  +AY+HELP+Y
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQY 86



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/78 (50%), Positives = 57/78 (73%)
 Frame = +3

Query: 510 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
           +PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK GV 
Sbjct: 172 IPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVE 231

Query: 690 ADAIEAIYKKAHEAIRAD 743
           A++IE +YKK H AIRA+
Sbjct: 232 AESIEEMYKKVHAAIRAE 249



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 40/82 (48%), Positives = 46/82 (56%)
 Frame = +1

Query: 262 VGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVG 441
           VGLTNYAAAY TG                          +++VEP D+    FR  LDVG
Sbjct: 90  VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVG 148

Query: 442 LARTTTGARVFGAMKGAVDGGL 507
           L RTTTG RVFGA+KGA+DGGL
Sbjct: 149 LIRTTTGNRVFGALKGALDGGL 170


>At5g60120.1 68418.m07537 AP2 domain-containing transcription
           factor, putative Similar to Floral homeotic protein
           APETALA2 protein (SP:P47927) [Arabidopsis thaliana];
           homolog HAP2, Hyacinthus orientalis, EMBL:AF134116
          Length = 485

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +1

Query: 397 VDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLMFLIPSKDSLAMMQNPKSSMLKY 576
           +D+   + R  +D+   R   G    G+  G  D   +   PS+      + P+S   +Y
Sbjct: 102 MDSSAQSSRSTVDISFQRGKQGGDFIGSGSGGGDASRVMQPPSQPVKKSRRGPRSKSSQY 161

Query: 577 TGLT 588
            G+T
Sbjct: 162 RGVT 165


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 14  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 187
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 14  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 187
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 570 EVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 689
           E HR H  G  V      L+ DD +S++    + +K+ +T
Sbjct: 502 EFHRPHSVGTSVENQPTQLDWDDLESYRCIIQELVKINLT 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,659
Number of Sequences: 28952
Number of extensions: 323910
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)