Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0593
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   110   2e-25
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   110   2e-25
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.37 
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    28   0.87 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   1.1  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.5  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   1.5  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   2.0  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   4.6  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   4.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   8.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.1  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   8.1  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   8.1  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  110 bits (264), Expect = 2e-25
 Identities = 54/90 (60%), Positives = 66/90 (73%)
 Frame = +2

Query: 254 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAIRAPTGKKTVLVQGQR 433
           GTVT+D RL  +PK++VAAL  T+ ARARIL AGGE+LT DQLA+RAPTG  TVL++G++
Sbjct: 86  GTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKK 145

Query: 434 NAREAVRHFGPAPGAPRSHTKPYVRPRDMK 523
           +AREA RHFG     P  H  PYVR    K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = +3

Query: 6   MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 185
           MGIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 186 ISVSRLA--RHMKKPTREGLIAVVVG 257
           IS+S++A     K  + EG   V+VG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVG 86


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  110 bits (264), Expect = 2e-25
 Identities = 53/90 (58%), Positives = 66/90 (73%)
 Frame = +2

Query: 254 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAIRAPTGKKTVLVQGQR 433
           GTVT+D R+  +PK+++AAL  T+ ARARIL AGGE+LT DQLA+RAPTG  TVLV+G++
Sbjct: 86  GTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKK 145

Query: 434 NAREAVRHFGPAPGAPRSHTKPYVRPRDMK 523
           +AREA RHFG     P  H  PYVR    K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +3

Query: 6   MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 185
           MGIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 186 ISVSRLA--RHMKKPTREGLIAVVVG 257
           IS+S++A     K  + +    VVVG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVG 86


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = -2

Query: 409 LLASRSTNSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPT---TTAI 239
           L+A  ST+S   K     S  +     F    K S    RYL Q   IC+ P+    T++
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112

Query: 238 KPSRVGFFMWRAKRDTEI 185
            PS+        K D EI
Sbjct: 113 SPSKSTIDNNERKLDNEI 130


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 367 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPT 251
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 269 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 382
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 370 SKNFSSSSQNACTSFFGNMKSSHRH 296
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -2

Query: 415 YCLLASRSTNSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPTTTA 242
           Y  +  +ST++  + S  F+  +QN+  + F N  +S  + +   Q++ I   PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSA 214


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 348 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 488
           LL   F+ ++ ++  LRL   +     WY ++++L+ +C T   +   RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -1

Query: 338 VHELFR*HEEQPPSSSVSCTVSRHL*LSHYHGNQTLTSWLL 216
           VH+ +  + E+P  S  +  +  H  ++  +G + LT W++
Sbjct: 26  VHQFYWTYTEEPHKSRRAAILKAHPEIASLNGYEPLTKWIV 66


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = +2

Query: 341 ILAAGGEILTFDQLA-IRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRPR- 514
           IL     IL  D  A +R  +GK +VL +  R      R  G +     SH    + PR 
Sbjct: 249 ILDDDNSILVPDLSAHVRINSGKLSVLSKNARLTHWVERRIGKSTSLVYSHVLSMLEPRL 308

Query: 515 -DMKKQGPVVVL 547
             +  Q PV  L
Sbjct: 309 FSISNQSPVFTL 320


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 316 MKSSHRHLRYLVQSHVICDCPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRL 164
           +K+S  HL   +Q  ++        + P  + +++WR +   E    +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 374 DQLAIRAPTGKKTVLVQGQRNAREAVRHFGPA 469
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 408 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 497
           R  +YK SE ++ Q   + +LQ+  ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 260 VTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLAIRAPTGKKTVLVQGQRN 436
           +TNDVRL++I  +  +   H  E   A  L A   +++   +     T  KT  V+G   
Sbjct: 702 ITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT--VEGALE 758

Query: 437 AREAVRHFGPAPG 475
             EA  + G  PG
Sbjct: 759 LVEAYANLGEMPG 771


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 26/105 (24%), Positives = 42/105 (40%)
 Frame = -2

Query: 469 SRAKVTHCLTSISLTLYQYCLLASRSTNSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLR 290
           S AKV +CL   S  +     +   S    L   +   SS+       F ++ +S R+  
Sbjct: 95  SFAKVINCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMVQAGQSFSHIVASKRNKD 154

Query: 289 YLVQSHVICDCPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKS 155
           +L+    + D        PS VGFF+W       +G  +  L+ S
Sbjct: 155 HLL----VTDGIYAYVRHPSYVGFFIWALGTQMLLGNFVSTLLFS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,871
Number of Sequences: 5004
Number of extensions: 51562
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)