Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0593
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 133 8e-32
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 132 3e-31
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 113 7e-26
04_01_0249 - 3284107-3286377 32 0.38
07_01_0755 - 5806614-5806939,5807039-5809415 29 2.7
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.7
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 4.7
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.2
09_04_0584 - 18714461-18716296 28 6.2
02_05_0598 + 30250535-30251218 28 6.2
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 8.2
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 27 8.2
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 8.2
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 133 bits (322), Expect = 8e-32
Identities = 61/90 (67%), Positives = 74/90 (82%)
Frame = +2
Query: 254 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAIRAPTGKKTVLVQGQR 433
GTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLA+RAP G+ TVL++G +
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150
Query: 434 NAREAVRHFGPAPGAPRSHTKPYVRPRDMK 523
NAREAV+HFGPAPG P S+TKPYVR + K
Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Frame = +3
Query: 6 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 182
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 183 PISVSRLARHM--KKPTREGL----IAVVVG 257
P+S+ RL R M K P R + IAV+VG
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVG 91
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 132 bits (318), Expect = 3e-31
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = +2
Query: 254 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAIRAPTGKKTVLVQGQR 433
GTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLA+RAP G+ TVL++G +
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143
Query: 434 NAREAVRHFGPAPGAPRSHTKPYVRPRDMK 523
NAREAVRHFG APG P SHTKPYVR + K
Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173
Score = 61.3 bits (142), Expect = 5e-10
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 182
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 183 PISVSRLARHMKKPTREGLIAVVVG 257
P+S+ RLA+ M + E IAV+VG
Sbjct: 61 PLSLRRLAKFM-EGKEENNIAVIVG 84
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 113 bits (273), Expect = 7e-26
Identities = 60/107 (56%), Positives = 73/107 (68%), Gaps = 17/107 (15%)
Frame = +2
Query: 254 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAIRAPTGKKT------- 412
GTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLA+RAP G+ T
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142
Query: 413 ----------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRPRDMK 523
VL++G +NAREAV+HFGPAPG P S+TKPYVR + K
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 182
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 183 PISVSRLARHMKKPTREGLIAVVVG 257
P+S+ RL R M+ +E IAV+VG
Sbjct: 61 PLSLRRLVRFME--GKENQIAVIVG 83
>04_01_0249 - 3284107-3286377
Length = 756
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 144 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGQSQMT*DCTRY 290
++RRL +S +N + R+ + KKPTR + + +GQ + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 337 CTSFFGNMKS-SHRHLRYLVQSHVICDCPTTTAIKPSRVGFFMWRAKRDTEIGGRL 173
C +G+ HR + Y V V+ C ++ V FMWR +++ E ++
Sbjct: 525 CGPIYGSSYGMDHRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 256 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 152
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 352 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 254
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 366 LLLISWLFVLRLARRQYWYKVSEML 440
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>09_04_0584 - 18714461-18716296
Length = 611
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 467 APGAPRSHTKPYVRPRDMKKQGPVVVL 547
A G PR PY +P D+KK V VL
Sbjct: 218 ALGLPRGQIPPYKKPHDLKKVWKVGVL 244
>02_05_0598 + 30250535-30251218
Length = 227
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 366 RISP-PAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPLPRQSNPHELASSCGAPNETQ 190
R +P PA + +AR + A G+ ++ + + P PR SNP+ + GA
Sbjct: 18 RAAPVPALRSQARHPLLLGHAGETALGV-WATRARLPAPPPRASNPNNDNDNSGAVEAPD 76
Query: 189 RLVA 178
RLVA
Sbjct: 77 RLVA 80
>09_04_0365 - 16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 310 SSHRHLRYLVQSHVICDCPTTTAIKPSRVGFFMWRAKRDTEIG 182
+S L ++ + C +PS+V FFMW A+R+ G
Sbjct: 875 ASAYELFFMANTEARCGSLIWHTREPSKVKFFMWLAEREVSHG 917
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 388 NSQLIKSKNFSSSSQNACTSFFG--NMKSSHRHLRYLVQSHVICDCPTTTA 242
N+ L+ KN SS+++ C NMK HR + SH++ P A
Sbjct: 171 NATLVTLKNKSSNARKECPGPITAKNMKEIHRPANQVHGSHILSTSPRGVA 221
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 378 SWLFVLRLARRQYWYKVSEMLVRQCV-TLALLQEHRALTLNPMFAQG 515
SW V L + Q+WY VS+ L + A + + + LNP G
Sbjct: 199 SWADVELLKKHQHWYNVSKTLAEKAAWDFAAKEGLQLVALNPGLVLG 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,543
Number of Sequences: 37544
Number of extensions: 378305
Number of successful extensions: 1017
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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