Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0592
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.6  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   8.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.1  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 106 YSNAQRNPITLTEDHFPTGNDPAAPFNNN 192
           Y   Q+N I L ++  PT N P  P  +N
Sbjct: 874 YEEIQKNEIVLKDEQDPTSNFPEIPGTSN 902


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 192 LGYCRNNTRSQWHCYDDDQPYVKDAFLRSGNYNVI 296
           LGY +NN  S  +C  +++ Y+K  F+   NY ++
Sbjct: 405 LGYLQNNVFSFLNCLFEEKKYMKH-FISWLNYAIV 438


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 510 RGSRPVILATGLPNFFQSLQ 451
           +G + ++L  G+PN+F+SL+
Sbjct: 541 KGCKLILLLEGIPNYFKSLK 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,291
Number of Sequences: 5004
Number of extensions: 63970
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)