Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0592
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    29   2.8  
04_03_0190 + 12448027-12450825                                         29   2.8  

>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 28  AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFP 156
           A  F + +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 204 RNNTRSQWHC---YDDDQPYV--KDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVG 365
           R N    +HC   Y     Y    D  +  GNY +++++W   +    ST+VM + G+G
Sbjct: 153 RGNLDGDYHCALPYSPQCGYFINSDDMIGFGNYKMLLINW--LAQKDSSTSVMVILGMG 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,591
Number of Sequences: 37544
Number of extensions: 400426
Number of successful extensions: 1079
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)