Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0592
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      54   9e-08
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            54   2e-07
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  52   3e-07
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)                 31   0.92 
SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)           28   6.5  
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
 Frame = +3

Query: 255 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLK----LPLNKVHI 422
           +K+  L  G++NVI+VDW   +   ++ AV     VG+  A  L+ L+      L  VH+
Sbjct: 134 MKNELLWEGDFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQILEERSGRKLAYVHV 193

Query: 423 VGFNLGAHVAGVTGRNLE 476
           +GF+ GAHVAG  GR ++
Sbjct: 194 IGFSFGAHVAGYVGRRMK 211


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = +3

Query: 255 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VH 419
           +KD  LR  + NVI+VDW   +   Y  AV     VG+ +A F+K  L L  ++     H
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFH 174

Query: 420 IVGFNLGAHVAGVTGRNLE 476
            +GF+LGAH++G  G+ L+
Sbjct: 175 SIGFSLGAHISGYVGQRLK 193


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
 Frame = +3

Query: 255 VKDAFLRSGNYNVIVVDWSSFS--LSTYSTAVMAVTGVGSSIATFLKNLK----LPLNKV 416
           ++D  L+    NVI VDW S +  L+ Y  A      VG+ +A  +  ++      L +V
Sbjct: 44  MRDELLKREPMNVITVDWQSGADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRV 103

Query: 417 HIVGFNLGAHVAGVTGRNLEGQ 482
           H++G +LGAHVAG  G  L G+
Sbjct: 104 HLIGHSLGAHVAGYAGERLSGK 125


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +3

Query: 255 VKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HI 422
           ++ A ++  + NVI  DWS  +   Y  A      VG+ I   +K L           ++
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYL 691

Query: 423 VGFNLGAHVAGVTGRNLEGQ*QEL 494
           VGF+LGAH++G  GR +    Q+L
Sbjct: 692 VGFSLGAHISGYVGRRIAKTGQKL 715


>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
          Length = 624

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 76  RFGSLNKYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTINPM 255
           R+    K Y + ++ R  +   + HF  G++PA  ++NN D+   +  H  + T  IN  
Sbjct: 548 RYSGCEKSYTHPSSLRKHL---KAHFKCGDNPAGIYDNNNDLETPVPPHRESKTARINGW 604

Query: 256 L 258
           L
Sbjct: 605 L 605


>SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = +3

Query: 213 TRSQWHCYDDDQPYVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN 392
           T  QW  Y D+   +K   + S  Y++    W S+        V+ V    S   T +KN
Sbjct: 245 TGDQWQSYQDENGMIKVRHMYSVKYSLTGDQWQSYQ---DGNGVIKVCPGNSDQTTVVKN 301

Query: 393 LKLPLNKVHIV 425
              P+ K   V
Sbjct: 302 EFSPVIKARYV 312


>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 260 FNIGLIVVVAVPL*PCIITTISQLLLKGAAGSFPVGKWSSVSVIGFLCALL 108
           FN+  I+ VAVP+   + TT      +    +F   K+ S S I  LC LL
Sbjct: 703 FNVARIMAVAVPMTILVTTTFLAFRERNNTDAFNEPKFLSFSTIA-LCILL 752


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 481  SSKNYGSRP-SARDWGNNVLRLGTNDAQYVEVIHT 582
            S+ N+ S+  S RD+G N+L +G  DA  ++ + T
Sbjct: 1056 STDNFASQAVSLRDFGVNILSIGAGDAYSLDELRT 1090


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,426,532
Number of Sequences: 59808
Number of extensions: 483645
Number of successful extensions: 1272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)