Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0592
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 517 DWGNNVLRLGTNDAQYVEVIH 579
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 270 LRSGNYNVIVVDWSSF 317
           +++G+Y V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 270 LRSGNYNVIVVDWSSF 317
           +++G+Y V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 249 VDRRRSSATVTVYYYDNIP 193
           VD+ R    VT+  YD +P
Sbjct: 70  VDQWRDKTFVTILRYDGVP 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,510
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)