Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0592
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    29   3.0  
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein         29   3.0  
At4g10880.1 68417.m01771 hypothetical protein predicted proteins...    27   9.3  

>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 64  QNLERFGSLNKYYYYSNAQRNPITLTEDH---FPTG--NDPAAPFNNNWDIVVIIH 216
           ++L  +GS   +Y+Y    +N +T T+ +    PTG   D   P  N  ++V I H
Sbjct: 53  RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108


>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 
          Length = 937

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +3

Query: 201 CRNNTRSQWHCYDDDQPYVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 380
           CRN T + W   +  +P   +    SGN    +    S   S Y      +T   SS   
Sbjct: 691 CRNTTTTSWASVETSRP---EKNTSSGNAEGSLFSKGSLMQSIYKRPSSPLTD-NSSALP 746

Query: 381 FLKNLKLPLNKV---HIVGF 431
           FLK LK  L ++   H++ F
Sbjct: 747 FLKKLKKVLGEMGLEHLISF 766


>At4g10880.1 68417.m01771 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 172

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 573 YSHRRIWCHKNGLGI--AIGHIDFFVNGVLSNR 665
           Y   +IWC  N LGI  + GH+ ++ + +  +R
Sbjct: 100 YDEMKIWCKTNDLGIYQSDGHLKYYKSVIARHR 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,544,642
Number of Sequences: 28952
Number of extensions: 328004
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)