Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0591
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    45   4e-05
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    29   4.1  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/53 (45%), Positives = 33/53 (62%)
 Frame = +1

Query: 247 GYQEGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 405
           G +E + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 64  GTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +2

Query: 59  MASQTQGIQQLLAAEKRAAEKVS 127
           MASQTQGIQQLLAAEKRAAEK++
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKIN 23


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 650 TWNGTELISHTINYLAKKLHFDISFSAPCCVFF*LSRLQEN 528
           TW+  ELIS   NY  K +  +I   A  C+F+ L +L  N
Sbjct: 324 TWDRVELISLPANYCTKDVG-NIRDWARVCIFYTLEKLPTN 363


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
           protein T19A5.1 protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 247 GYQEGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLV 366
           GY E +   +    K+ + +++K +Q  K+A+ KD  NLV
Sbjct: 775 GYSEPLFHYVQGRMKLLLHDVDKAIQHLKDAMDKDPNNLV 814


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,204
Number of Sequences: 27780
Number of extensions: 238623
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)