Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0591
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04390.1 68417.m00627 Ulp1 protease family protein contains P...    29   3.8  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   5.0  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   6.7  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    28   6.7  
At1g64380.1 68414.m07296 AP2 domain-containing transcription fac...    27   8.8  

>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 963

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 45  CVFSIWRVRPKESNSF*LLKNALRRKSARQGSEKRNA 155
           CV S   V PK+     +LK    RKSA+QG  K+N+
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKNS 376


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 253 QEGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 390
           Q   AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 83  QRKEAARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 359  FKTSLMTASFCVWTI-LFISSILTLVSASILAATPSWYPCA 240
            F T  + +SF V ++ LF+  I TL+ +SI      W P A
Sbjct: 1076 FPTQRIKSSFVVSSLPLFLIYIFTLIQSSITVKDGDWVPSA 1116


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 519 CRQVFLEPT*LKKNTARRRK*NVKVQFFCQVIYCMRNQLGTIPSVENSLR 668
           C Q FLE   + +   + R  + K+QF  QV   +R  L TI S  N +R
Sbjct: 851 CEQFFLELLKVPRVETKLRVFSFKIQFHSQVT-DLRRGLNTIHSAANEVR 899


>At1g64380.1 68414.m07296 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 335

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 308 ISSILTLVSASILAATPSWYPCAWLQIL*TAFHAPVCTFQLHLEPPPWPALGVSLF 141
           IS I   +S  ILA  P+     +  +  ++  +   +F  H  PPP P LG S++
Sbjct: 16  ISEIRASLSQIILAGGPNTLDSIFSLLTPSSVESATTSFNTH-NPPPPPQLGSSVY 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,780
Number of Sequences: 28952
Number of extensions: 219639
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)