Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0590
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 3.5
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 3.5
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 27 3.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 4.6
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.6
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 4.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 6.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.0
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 8.0
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 165 NLVLVSKPPSRRGSETSKNTHASSSVTARLRHSLCQTHRRSWWMLCPRRL 314
+L ++K P ET N H ++ S C +R + + CPRRL
Sbjct: 350 SLSAITKEPE--APETEYNPHGVFTLLTECYSSTCSRNRLCYSISCPRRL 397
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 169 WSSSASRHRGGDQRHRKTHMPQVPLPRG*DTAF 267
WS+ A +H GD +K+H VP R +F
Sbjct: 77 WSAIAKKHVQGDSPVKKSHSVPVPSDRSEKKSF 109
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 513 YTQDLVGNLGVEYDYVSCLHYGPYAFSQNGEKTIVALQEHEG 638
Y +LVG+ G + C + PY + +K+I+A H+G
Sbjct: 270 YDINLVGHQGP----LECATFNPYLYEDPFQKSIIASAAHDG 307
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 50 DDFMIEILLRQYAMGRNAYTWPNTKWPNNTVVWEFGEGEFGPRQQAAIEEGIRDIEKHTC 229
D ILL+ Y G+ Y P +PN+ EF + E + +A + I + + T
Sbjct: 444 DSRAARILLKDYVNGKLLYVHPPPNYPNSGS--EFNK-EHHQKIVSATSDSITEKLQRTA 500
Query: 230 LKFRYREAETQPLSD 274
+ AE+Q + D
Sbjct: 501 ISDNTLSAESQLVDD 515
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 379 RHATIVHEWMHILGFLHMQSTHNRDDYVKIVKENITPGLQHNFAS 513
R++ I +++HI+ FL + S + ++DY + FAS
Sbjct: 237 RYSFISEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGTFAS 281
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 154 WRGGIWSSSASRHRGGDQRHR 216
W GG WS++++ R +QR R
Sbjct: 137 WLGGFWSTASAAVRSAEQRVR 157
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 180 SKPPSRRGSETSKNTHASSSVT 245
SKP S + + TS+ T ASS++T
Sbjct: 287 SKPNSLKSNNTSRKTSASSAIT 308
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 450 RRLC*DRQRKHYAWSSAQLRIYTQDLVGN-LGVEYDYVSC 566
R C D++ Y + A Q+ V LGVEYDY C
Sbjct: 841 REECRDQEHLCYPETGAIESYLNQEFVQEALGVEYDYKGC 880
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 399 VHDGGVAETAHSWLVAGKVQHVHAS 325
+HD G ET SW+ G + A+
Sbjct: 502 LHDSGTCETGKSWMYGGMALRMAAA 526
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 358 EPGVGCFRHATIVHEW 405
EP V CF H IVH+W
Sbjct: 238 EP-VFCFEHCKIVHDW 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,949
Number of Sequences: 5004
Number of extensions: 68761
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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