Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0590
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0109 - 14674980-14675004,14675861-14676468 31 0.68
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 31 0.68
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 31 0.68
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 30 1.6
04_03_0703 - 18870287-18871351,18871542-18871733 30 1.6
05_01_0126 + 858259-858489,858641-859189,859545-860162 26 2.0
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 29 2.7
06_02_0307 + 14122217-14122459 29 2.7
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 29 3.6
10_08_0651 - 19594149-19594507,19595165-19595219 29 4.8
08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199 29 4.8
08_01_0534 - 4635122-4635380,4635716-4635837 29 4.8
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 4.8
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192... 29 4.8
11_04_0200 - 14766546-14766797,14766885-14767151 28 6.3
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 28 6.3
04_04_0921 - 29431812-29432786 28 6.3
04_01_0363 + 4754650-4755912 28 6.3
03_06_0690 - 35571816-35572586 28 6.3
12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33... 28 8.4
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 28 8.4
03_04_0052 - 16859200-16860060 28 8.4
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 183 KPPSRRGSETSKNTHASSSVTARLRHSLCQTHRRSWWMLCPRRLLG--ITRRARVEPCPQ 356
+PP + + + +++V+ RH L +L P + T R R PC Q
Sbjct: 29 RPPPKVAASFALRPMVAAAVSPPPRHRLLLPPPPGRCLLHPPPTVAASFTHRPRSPPCLQ 88
Query: 357 RARSGLFPPRH-HRAR 401
++SG PP H H AR
Sbjct: 89 NSKSGSPPPSHLHHAR 104
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 160 GGIWSSSASRHRGGDQRHRKTHMPQ 234
GG+W + +RH GD R TH P+
Sbjct: 41 GGVWQETEARHLAGDSIIRDTHYPR 65
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 385 ATIVHEWMHILGFLHMQSTHNRDD 456
AT++HE MH+LGF TH RD+
Sbjct: 291 ATLIHEVMHVLGFDPHAFTHFRDE 314
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 345 PCPQRARSGL-FP-PRHHRARVDAHPRLPPHAVHPQQ 449
P P+ R G+ P PRHHR R P LPP + +Q
Sbjct: 54 PAPETHRPGIRHPVPRHHRKRPHVAPPLPPPSSSERQ 90
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 186 PPSRRGSETSKNTHASSSVT-ARLRHSLCQTHRRSWWMLCPRRLLGIT 326
PP R + +T +S+S++ AR S C T RRS W CP G T
Sbjct: 236 PPPARAAAGPPSTGSSTSMSRARCCGSACGT-RRSTWSPCPPGCTGFT 282
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 273 THRRSWWMLCPRRLLGITRRARVEPC 350
THR W M C RLL + A V PC
Sbjct: 315 THRVEWVMTCCHRLLCV-GCAEVNPC 339
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 198 RGSETSKNTHASSSVTARLRHSLCQTHRRS 287
R + T+ + H S ++ +R S +H RS
Sbjct: 254 RATATASHEHVSRPISGVIRSSSSSSHSRS 283
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -3
Query: 456 VVSVVGGLHV--EEAEDVHPLVHDGGVAETAHSWLVAGKVQHVHAS*FP 316
VV+VV L + E+ D PLV GGV E W ++G+V + FP
Sbjct: 266 VVAVVRRLKLCGEDGMDQFPLVLVGGVLEGNKKWNISGEVVRCISKVFP 314
>06_02_0307 + 14122217-14122459
Length = 80
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 442 GWTACGGSRGCASTRARWWRGGN--SPLLARCGQGSTRARL 326
GWTA G G RW GG SP++A CG+G R L
Sbjct: 5 GWTAAGSGGG------RWSGGGLFVSPVVAGCGKGRRRPDL 39
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +2
Query: 110 WPNTKWPNNTVVW-EFGEGE 166
WPN+KW N V W E G GE
Sbjct: 313 WPNSKWRNLQVEWDEHGYGE 332
>10_08_0651 - 19594149-19594507,19595165-19595219
Length = 137
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 546 QRLSYQRDLVCRCE-VVLKTRRNVFFDDLNIVVSVVGGL 433
QR+ ++R+ CRC VV+K V F ++IVV VVGGL
Sbjct: 34 QRMRHRRE--CRCHMVVVKVMLAVAF--IDIVVFVVGGL 68
>08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199
Length = 342
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = -3
Query: 435 LHVEEAEDVHPLVHDGGVAE----TAHSWLVAGKVQHVHAS*FPVTDVGITSTSSAGESD 268
+HV + D H ++ A A L G+V + A+ FP V AGE+
Sbjct: 237 VHVRDVADAHARAYESPAARGRYLCAGRTLHRGEVCRILAALFPGYPVPTRCKGDAGETA 296
Query: 267 KGCVSASR 244
+GC +SR
Sbjct: 297 EGCRFSSR 304
>08_01_0534 - 4635122-4635380,4635716-4635837
Length = 126
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = -2
Query: 439 WTACGGSRGCASTRARWWRGGNSPLLARCGQGSTR--ARLVIPSNRRG 302
W +CGG G S R W G RC G R R + RRG
Sbjct: 75 WKSCGGRTGSRSAVGR-WTGAVEATRYRCLAGGNRVGGRRTTATGRRG 121
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 138 PLFGNLERGNLVLVSKPPSRRGSETSKNTHASSS 239
P+ N+++ +LVLV K S S TS+ H+S S
Sbjct: 107 PIVVNIDKLDLVLVEKDNSEDLSSTSRQIHSSGS 140
>01_07_0061 +
40818077-40818241,40818494-40818716,40819015-40819263,
40819455-40819505,40819611-40819871,40819994-40820046,
40820234-40820348,40820475-40820696,40821280-40822253
Length = 770
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 358 EPGVGCFRHATIVHEWM-----HILGFLHMQSTHNRDDYVKIVKENITPGLQHNFASTHK 522
EP GC +H+ M H+LG ++ + N D KI+ + + ++ NF K
Sbjct: 693 EPRNGCMDEIQSIHKEMGNGVVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEK 752
Query: 523 ISLV 534
I+ V
Sbjct: 753 ITCV 756
>11_04_0200 - 14766546-14766797,14766885-14767151
Length = 172
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 130 EQHRCLGIW-RGGIWSSSASRHRGGDQRHRKTHMPQVP--LPRG*DTAFVRLTGGAGGCY 300
E+H+ G+ R G SSS+S G R +K ++ LP G GG GG Y
Sbjct: 71 EEHKTGGVLQRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGEQQHAMGGTGGAY 130
Query: 301 AHVGY 315
G+
Sbjct: 131 GQQGH 135
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 123 SGRTTPLFGNLERGNLVLVSKPPSRRGSETSKNTHASSSVTARLRHSLCQT 275
SG TP FGNL R L+ R+ E++ + +H LCQ+
Sbjct: 321 SGDGTPPFGNLPRLGLLESLAEYDRQAKESALEIERQFRLVVDKQHMLCQS 371
>04_04_0921 - 29431812-29432786
Length = 324
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 445 CGWTACGGSRGCASTRARW 389
C W CGGSR ++ RW
Sbjct: 156 CAWLRCGGSRWWSAAGGRW 174
>04_01_0363 + 4754650-4755912
Length = 420
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 403 TRARW-WRGGNSPLLARCGQGSTRAR 329
T ARW WR G P R G+G +R R
Sbjct: 189 TVARWEWRSGGEPRRRRGGRGGSRPR 214
>03_06_0690 - 35571816-35572586
Length = 256
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 384 RHHRARVDAHPRLPPHAVHPQ 446
RHH+ +HPR PP HP+
Sbjct: 77 RHHKTSSSSHPR-PPRRAHPE 96
>12_01_0042 +
337131-337612,338727-338898,338996-339204,339414-339572,
339914-340262
Length = 456
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/67 (17%), Positives = 27/67 (40%)
Frame = +3
Query: 477 KHYAWSSAQLRIYTQDLVGNLGVEYDYVSCLHYGPYAFSQNGEKTIVALQEHEGVMGQRL 656
+H+ ++R+Y L+ EY+ ++ P N + I+ E+ + R+
Sbjct: 196 EHFIPDGRKMRVYNGSLISFKAFEYNATIDFYWSPLLLESNSDNPIIHRVEYRIIRADRI 255
Query: 657 YVTDDDW 677
+ W
Sbjct: 256 EKHANVW 262
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/67 (17%), Positives = 27/67 (40%)
Frame = +3
Query: 477 KHYAWSSAQLRIYTQDLVGNLGVEYDYVSCLHYGPYAFSQNGEKTIVALQEHEGVMGQRL 656
+H+ ++R+Y L+ EY+ ++ P N + I+ E+ + R+
Sbjct: 218 EHFIPDGRKMRVYNGSLISFKAFEYNATIDFYWSPLLLESNSDNPIIHRVEYRIIRADRI 277
Query: 657 YVTDDDW 677
+ W
Sbjct: 278 EKHANVW 284
>03_04_0052 - 16859200-16860060
Length = 286
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +3
Query: 168 LVLVSKPPSRRGSETSKNTHASSSVTARLRHSLCQTHRRSWWMLCPRRLLGITRRARVEP 347
L+L P S A++ A R + R +LC LL + R A +
Sbjct: 22 LLLSQHQPRAIADHLSAGATAATLFDALARLLGLLSPRNHMILLCNAILLLVLRDAGLLA 81
Query: 348 CPQRARSGLFPPRHHRAR-VDAHPRLPPHAVHPQQRR 455
CP PPRHH A DA P + + +RR
Sbjct: 82 CPAPPAPAP-PPRHHAAADDDASPPVAASSAASSRRR 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,326,478
Number of Sequences: 37544
Number of extensions: 559730
Number of successful extensions: 1937
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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