Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0590
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.53 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 379 RHATIVHEWMHILGFLHMQSTHNRDDYVKIVKE 477
           RH  +   +  I+GF  + ST++  + VKI+ E
Sbjct: 268 RHENVSILYADIVGFTAISSTYSASELVKILNE 300


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 26  KFQGDIVLDDFMIEIL 73
           K  GD+ +DDF++E+L
Sbjct: 406 KMIGDVPIDDFLVEML 421


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 26  KFQGDIVLDDFMIEIL 73
           K  GD+ +DDF++E+L
Sbjct: 406 KMIGDVPIDDFLVEML 421


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 268 VRLTGGAGGCYAHVGYWESRGVHVLNLARNE 360
           +RL G   G  +    W+   + +LNLARN+
Sbjct: 483 LRLIGNDIGNLSRGMLWDLPNLQILNLARNK 513


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 171 VLVSKPPSRRGSETSKNTHASSSVTARL 254
           +L S+P      E SKN H  +  T +L
Sbjct: 48  LLTSQPHQDHNKEKSKNNHHCNQDTEKL 75


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 681 EASHRRLHTNADPSHPRAPAEQR 613
           + SH  LH N+ PS  ++  +Q+
Sbjct: 807 QQSHHGLHINSSPSSVQSGQQQQ 829


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 257 TQPLSDSPAELVDVMPTSVT 316
           T   S SP EL   +PTS+T
Sbjct: 369 TSTYSGSPTELPKHLPTSLT 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,947
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)