Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0589
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      29   5.6  

>SB_35978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 433 REGWDGSPLWVIRSHHSGELIPGK 504
           R  WDG PL   R H  G L+PG+
Sbjct: 29  RMTWDGFPLHYSRKHGWGYLVPGR 52


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 25/86 (29%), Positives = 35/86 (40%)
 Frame = +3

Query: 486  RTDPRETSIKHRSAYIPHAGKEIPVHNFEVLCAPGNVLRWVPASNGQVPVGAIPAGNSHS 665
            R DPR  +  H  A +   GK       +VL    NVL  + ++ GQ P     A    +
Sbjct: 819  RNDPRTLNQPHGIA-VMDKGKAEENTGKKVLPTQVNVLDEIVSAQGQEPGNPAQAPGYPA 877

Query: 666  GEPLYIARVNHLKSVTPGKVHPSHGC 743
              P Y A+V    +  PG    + GC
Sbjct: 878  QAPGYPAQVPGYPAQVPGYPAQAPGC 903


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,621,301
Number of Sequences: 59808
Number of extensions: 481257
Number of successful extensions: 2578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)