Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0589
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 567 FEVLCAPGNVLRWVPASNGQVPVGAIPAGNSHSGEPLYIARVNHLKSV 710
           FE + APG  + +V  +  ++P   +  G  ++GEPL + R N  K V
Sbjct: 673 FEKMDAPGKDIEFVIKNGERIPDEDVNWGGEYTGEPLDVGRRNRGKLV 720


>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 206 VYTRILQDGVDNHRAAEAGDHSVECS--TFLFRDTFTYFRNAQKSMFFMMVRQSYNLN 39
           V  R   DG DN    E  D + ECS  +F F D  +  +N++ S +      +  +N
Sbjct: 269 VPARFRDDGEDNEDDFEREDINTECSSDSFKFIDVISKLQNSENSKWLQAQPTTIEMN 326


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 206 VYTRILQDGVDNHRAAEAGDHSVECS--TFLFRDTFTYFRNAQKSMFFMMVRQSYNLN 39
           V  R   DG DN    E  D + ECS  +F F D  +  +N++ S +      +  +N
Sbjct: 321 VPARFRDDGEDNEDDFEREDINTECSSDSFKFIDVISKLQNSENSKWLQAQPTTIEMN 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,184,800
Number of Sequences: 27780
Number of extensions: 352238
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)