Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0589
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.1  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   8.1  
At1g65920.1 68414.m07480 regulator of chromosome condensation (R...    28   8.1  

>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 666

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 528 YIPHAGKEIPVHNFEVLCAPGNVLRWVPASNGQVPVGAIP 647
           YIPH  + IP+++ +    P  V+  VP S   +P G  P
Sbjct: 491 YIPHPSQYIPIYSHQQQNYPVYVMS-VPQSQQYIPAGTPP 529


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 604 GYQHPTVKFL*VRFQLATLIAENPCILPGSTT*NLLHLGRFIPVTDVAISPLERR 768
           G   P+VK +  R +L   I   P  +PGS     L    ++P TDV    +  R
Sbjct: 189 GKTEPSVKSVWQRERLVGKIDNKPGKVPGSHIDGFLATSAYLPTTDVVTETINIR 243


>At1g65920.1 68414.m07480 regulator of chromosome condensation
           (RCC1) family protein / zinc finger protein-related
           contains Pfam profiles: regulator of chromosome
           condensation (RCC1), PF01363 FYVE zinc finger
          Length = 1006

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 561 HNFEVLCAPGNVLRWVPASNGQVPVGAIPAGNS 659
           H+  VL + GNV  W    NGQ+ +G +   NS
Sbjct: 573 HHVAVLTSFGNVYTWGKGMNGQLGLGDVRDRNS 605


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,119
Number of Sequences: 28952
Number of extensions: 331351
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)