Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0588
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 32 0.38
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 2.7
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 2.7
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.7
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 2.7
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 2.7
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 2.7
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 29 2.7
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 29 2.7
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.7
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 29 2.7
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.7
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 2.7
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 29 2.7
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39) 29 4.7
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 6.2
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 6.2
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 6.2
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5) 28 8.2
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 478 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 302
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 301 ESGADVAD 278
+ A+ D
Sbjct: 225 SNVANDGD 232
>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 100
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 32 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 86
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 219 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 273
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 191 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 245
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 87 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 146 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 200
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 172 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 226
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 594 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 648
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 1145 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 1199
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 8 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67
Query: 452 --ADNIIVSDIGAAITIGD 502
++I V I +GD
Sbjct: 68 METNDIAVRPAKGQIILGD 86
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 1201 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 1255
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 389 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 448
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 449 MEKNDIAVRPAKGQIILGD 467
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 1204 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 1258
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 517 GG*FDI-ANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 371
GG DI +S+ + TD D + +G+GSGS N + G +GS +++A
Sbjct: 689 GGEDDILVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 607 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 661
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 780 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 834
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 293 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 451
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411
Query: 452 AD--NIIVSDIGAAITIGD 502
+ +I V I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 432 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 486
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 78 PNSQRILDIMISN--LFNEIGELLRAADPLRRDGY 176
P SQRIL +++ LFN+ L AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192
>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
Length = 225
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 555 DGWSNFASEEIDLEVSLTSPIVIAAPMS--LTMMLSARETEAVASATTFSRA 406
D W A+ ++ V+ SP A PMS ++ S+ +T V+S+ T S A
Sbjct: 90 DDWKEIAAPPNEITVTTPSPSSTATPMSSVTSIQSSSAKTTQVSSSVTTSDA 141
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 172 PPAEPVAETPPTTQANNDPVPSCMPDASSQAPQPPHEPRRPTRARTRPKRYEPET 226
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP +RPTR + Y +T
Sbjct: 172 PPAEPVAETPPTTQANNDPVSSCMPDASSQAPQPLPEPKRPTRARTRPKRYEPET 226
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 513 PPNQSLRTRSWTSRQQLPREDSCLPDGLRSRGQPCSGVRRPTRHQQITGNYSNDT 677
PP + + T++ SC+PD QP RRPTR + Y +T
Sbjct: 201 PPAEPVAETPPTTQANNDPVFSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPET 255
>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
Length = 207
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 302 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 478
N+ + R +AS G + EIR+ + + GGLAL + AT L ++VS +
Sbjct: 12 NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71
Query: 479 GAA 487
G A
Sbjct: 72 GLA 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,389,542
Number of Sequences: 59808
Number of extensions: 385466
Number of successful extensions: 1245
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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