Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0587
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.68 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.4  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 307 GKKLVELGFAKASFPKELKKNTIES 381
           G+ LVE G  K   P+E  K T+ S
Sbjct: 20  GRTLVEKGLRKQGVPREATKITLSS 44


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 299 WILVKNWWSLDLQKHHFLK 355
           W+L+KN  + D + H F K
Sbjct: 405 WVLLKNKVTSDTRTHQFAK 423


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 470 AGIGGRFSDQMPFLRLFACASADNRAGAICDSMVFF 363
           AG+G    D + F R       DN   A+  ++V F
Sbjct: 430 AGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVIF 465


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 453 SPTNSSIYRLLEKRFTAYLE 512
           +P N ++Y +LEK +   LE
Sbjct: 370 NPDNPNVYEILEKLYKDLLE 389


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 582 SLLKHFWW*ILTVAVTSW 529
           SLL H W  ++ + V++W
Sbjct: 472 SLLWHTWMPVMRICVSAW 489


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 78  TKPQYIYRYGIPVNLHYQ--LSCGE 146
           TKP  I +Y IPV L  +  +SC +
Sbjct: 179 TKPTAIQKYAIPVILSGRDLMSCAQ 203


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 389  PLLYYQQKHKQKAS 430
            P+LY+  +HK+K S
Sbjct: 1520 PMLYFVIEHKKKTS 1533


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,085
Number of Sequences: 336
Number of extensions: 3437
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)