Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0587
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    29   0.41 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    29   0.72 
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   6.7  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   8.9  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 245 VSTDYCIYLSLRV-KMFKHWILVKNWWSLDL-QKHHFL 352
           +S +   Y  LRV +  +HW L +NW S+ L QK +F+
Sbjct: 57  LSANKIFYSKLRVYQTVRHWSLKQNWSSMSLDQKRNFI 94


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 17  EPLKGLYAGVQ----HSPVRVLVNHKAPIYLPLWHSSK 118
           EP + L   +Q    HS +  L +  AP  LP WHSSK
Sbjct: 334 EPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSK 371


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 128 PVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 226
           P K W  E  +G A  W+E + +   ++L P G
Sbjct: 545 PTKSWSFEDPNGPASAWVELLDKASSISL-PFG 576


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 362 KRIPLSHKLPLLYYQQKHKQKASETAFGLRISHQFQHISFIGEKVHSLL 508
           K  P +H+L + YYQ  H     E AF  R++ + +  S++ ++ H ++
Sbjct: 209 KSAPGNHELVVDYYQILHAAPTGEEAFTNRLNAEAEP-SYLLDQRHLVI 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,201
Number of Sequences: 5004
Number of extensions: 56113
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)