Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0587
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741... 31 0.74
11_06_0530 + 24696399-24697592 29 2.3
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654 29 4.0
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 5.2
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 28 5.2
01_06_1623 - 38716606-38717424 28 5.2
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 28 6.9
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 27 9.2
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 27 9.2
07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823 27 9.2
04_04_0718 + 27536657-27537688 27 9.2
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942 27 9.2
>03_06_0116 +
31773295-31773603,31773800-31773946,31774080-31774158,
31777558-31778180
Length = 385
Score = 31.1 bits (67), Expect = 0.74
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = +2
Query: 284 KMFKHWILVKNWWSLDLQKHHFLKN*KR--IPLSHKLPLLYYQQKHKQKASETAFGLRI- 454
K KH +L+K SL + F K K+ +P +L LL++ + H K + I
Sbjct: 207 KQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266
Query: 455 -SHQFQHISFIGEKV-----HSLLGVICIDSQEV 538
SH +F K+ LLG C+ QEV
Sbjct: 267 ASHLINSTTFFCTKLDLMKMRELLGCTCVYEQEV 300
>11_06_0530 + 24696399-24697592
Length = 397
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 358 LKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAYIVY 483
L N++ +I P L+S+ LRN + +PP+PA +VY
Sbjct: 180 LSHNSLSGEI-PKLVSSPLVHLDLRNNRLTGGVPPLPATLVY 220
>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
Length = 381
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 89 IYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 226
+ LPL KP P +L +E G +NW G T + IG
Sbjct: 234 VALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 220 WL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 131
WL H AP+N F+P + +PT FN+ + N
Sbjct: 395 WLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 301 DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 465
D+ LV+ G AK E N ++ Q+ L +A+ Q K + IW+ PP+
Sbjct: 321 DLALDLVQNGLAKYV---EWSANVLDPQLKTKLRNADLQVKKEQLRIWTGFKPPV 372
>01_06_1623 - 38716606-38717424
Length = 272
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 35 YAGVQHSPVRVLVNHKAPIYLP 100
YA SPVR++VN+K+P +P
Sbjct: 196 YAAPDMSPVRIVVNNKSPSEIP 217
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 286 DVQTL-DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPP 462
D TL D+ +LVE G AK E N ++ L +AE QAK + IW+ PP
Sbjct: 313 DGDTLKDLALELVENGLAKYV---EWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPP 369
Query: 463 I 465
+
Sbjct: 370 V 370
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 356 SLGNDAFANPSSTNFLPISN 297
S NDAF +PS F+P+SN
Sbjct: 187 SESNDAFLSPSIETFVPVSN 206
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 347 FLKN*KRIPLSHKLPLLYYQQKHKQKASETAFGLRISHQFQHISFIGEKVHSLLGVICID 526
F +N K IP + K P +K ASE + +S Q Q IS + E + C++
Sbjct: 673 FKENAKYIPSTSKGPCKSMHEKSAHIASECSAFYFVSQQSQSISLLEETDRQIREKSCME 732
Query: 527 S-QEVTATVKIYHQK 568
+ + YH++
Sbjct: 733 QVRRLKEARNSYHEE 747
>07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823
Length = 224
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 500 CEPFLQ*TIYAGIGGRFSDQMPFLRLFA 417
C PF++ AG+G + D +P RL A
Sbjct: 32 CVPFMEKLFAAGLGSKIMDALPSPRLMA 59
>04_04_0718 + 27536657-27537688
Length = 343
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 334 AKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAY 474
A + P+ + + S APA SAEA A R + SE LP I +
Sbjct: 33 AASPAPRRCLRLAVTSAAAPAASSAEAAAALSRVDVLSEALPFIQRF 79
>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
Length = 1020
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 392 LLYYQQKHKQKASETAFGLRISHQFQHISF 481
+L +Q+K KQ+ + A L I Q+Q +S+
Sbjct: 659 ILLHQRKFKQRQNRQATSLVIEEQYQRVSY 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,280
Number of Sequences: 37544
Number of extensions: 348488
Number of successful extensions: 869
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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