Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0587
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6937| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.43 
SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)                 30   1.3  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   3.1  
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_6937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 304 IGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAYIVY 483
           + ++LV  G A  +  KEL+ + +   +   LL AE +A+    G+W +     P+Y  +
Sbjct: 7   VNEELVRQGLAVTARCKELENHKLYQGLFTRLLKAEVRAEKTGKGVWEK-----PSYTKH 61

Query: 484 WRKG--SQLTWS 513
            ++   S +TW+
Sbjct: 62  AKQTIYSMITWT 73


>SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)
          Length = 486

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 KHKQKASETAFGLRISHQFQHISFIGEKVHSLL 508
           K ++K S  AF LR+ +  QH  FIGE ++  L
Sbjct: 80  KREEKESVAAFKLRLWNAIQHCGFIGETLNKNL 112


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -1

Query: 330  SKLHQFFTNIQCLNIFTLRLR*MQ*SVETRSSLSLPIGFNVTCWPLATHSSQLTAFPLTT 151
            S L  F T+   L++F      +   + + SSLS  +  + +     T SS L+ FP ++
Sbjct: 807  SSLSVFLTSSSSLSVFLTSSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSVFPTSS 866

Query: 150  SIPHSLTGSGGL 115
            S+P     S  L
Sbjct: 867  SLPSDFLTSSSL 878


>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 334 AKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 465
           A    PK+   +T+E+ I P  L+ +A AK +     S  LPPI
Sbjct: 359 ATCPIPKQRPPSTVENDIRPIALTCQA-AKVMEGFTLSRILPPI 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,979
Number of Sequences: 59808
Number of extensions: 392922
Number of successful extensions: 898
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)