Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0587
         (624 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060312-1|AAL25351.1|  239|Drosophila melanogaster GH17623p pro...    41   0.002
AE013599-272|AAS64795.1|  239|Drosophila melanogaster CG30159-PB...    41   0.002
AE013599-271|AAM70842.1|  239|Drosophila melanogaster CG30159-PA...    41   0.002

>AY060312-1|AAL25351.1|  239|Drosophila melanogaster GH17623p
           protein.
          Length = 239

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +2

Query: 29  GLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQ 202
           G  AGV  Q     +++ H+ P++ P++ SSK  LPVKL G+  V+ N  +WL+    G+
Sbjct: 73  GKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVKLPGVR-VNANGYSWLQQCLIGR 129

Query: 203 QVTLKPI-GRDNDDLVSTDYCI 265
           + T  P+      D V    C+
Sbjct: 130 EATFLPLKSAKGQDFVVCQLCL 151


>AE013599-272|AAS64795.1|  239|Drosophila melanogaster CG30159-PB,
           isoform B protein.
          Length = 239

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +2

Query: 29  GLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQ 202
           G  AGV  Q     +++ H+ P++ P++ SSK  LPVKL G+  V+ N  +WL+    G+
Sbjct: 73  GKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVKLPGVR-VNANGYSWLQQCLIGR 129

Query: 203 QVTLKPI-GRDNDDLVSTDYCI 265
           + T  P+      D V    C+
Sbjct: 130 EATFLPLKSAKGQDFVVCQLCL 151


>AE013599-271|AAM70842.1|  239|Drosophila melanogaster CG30159-PA,
           isoform A protein.
          Length = 239

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +2

Query: 29  GLYAGV--QHSPVRVLVNHKAPIYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQ 202
           G  AGV  Q     +++ H+ P++ P++ SSK  LPVKL G+  V+ N  +WL+    G+
Sbjct: 73  GKIAGVKQQEQDTLLMIQHR-PLF-PIFTSSKRLLPVKLPGVR-VNANGYSWLQQCLIGR 129

Query: 203 QVTLKPI-GRDNDDLVSTDYCI 265
           + T  P+      D V    C+
Sbjct: 130 EATFLPLKSAKGQDFVVCQLCL 151


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,249,586
Number of Sequences: 53049
Number of extensions: 607229
Number of successful extensions: 1624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)