Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0587
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07350.1 68418.m00839 tudor domain-containing protein / nucle...    32   0.27 
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    31   0.47 
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    31   0.47 
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ...    28   4.4  
At4g13965.1 68417.m02160 F-box family protein contains F-box dom...    28   4.4  
At1g49420.1 68414.m05540 heavy-metal-associated domain-containin...    28   5.8  
At2g01690.2 68415.m00097 expressed protein                             27   7.7  
At2g01690.1 68415.m00096 expressed protein                             27   7.7  

>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 991

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 301 DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPP 462
           D+G +LVE G AK     E   N +E +    L +AE Q K  +  +W+  +PP
Sbjct: 318 DLGLELVENGLAKFV---EWSANMMEEEAKKKLKAAELQCKKDKVKMWANYVPP 368


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 301 DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPP 462
           D+G +LVE G AK     E   N ++ +    L + E Q K  R  +W+  +PP
Sbjct: 322 DLGLELVENGLAKYV---EWSANMLDEEAKKKLKATELQCKKNRVKMWANYVPP 372


>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1280

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +2

Query: 266 YLSLRVKMFKHWILVKNWW-SLDLQ--KHHFL--KN*KRIPLSHKLPLLYYQQKHKQKAS 430
           YL+L   +FK   L+  WW SL  +     FL  ++  +  L H +P++++    +  + 
Sbjct: 419 YLALACHLFKREELMVQWWRSLHFEFLFEGFLSCRSSNKHDLQHLMPVVWWPGSSEDISY 478

Query: 431 ETAFGLRISHQFQHISFIGEKVHSL 505
           E++ G  IS   + I+ I EK  +L
Sbjct: 479 ESSMGFTISALSEAINKIEEKQRNL 503


>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to Fzr1
           (GI:6463679){Homo sapiens}
          Length = 481

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 246 TRSSLSLPIGFNVTCWPLATHSSQLTAFPLTTSIPHSLTGSGGLLECHSGKYIGA 82
           T++ L+LP G N T   L T SS       + S P   T S   + C S   + A
Sbjct: 7   TKTGLNLPAGMNQTSLRLETFSSSFRGIS-SLSSPSKSTCSDRFIPCRSSSRLHA 60


>At4g13965.1 68417.m02160 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 294

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 242 LVSTDYCIYLSLRVKMFKH-WILVK--NWWSLDLQKHHFL---KN*KRIPLSHKLPLLY 400
           L+ T+  +  S+  K ++  W ++   N+ SLD Q+H F    KN KR  LSHK P+L+
Sbjct: 30  LLPTEVAVTTSVLSKQWQFLWKMLPKLNFDSLD-QRHEFKTFSKNVKRALLSHKAPVLH 87


>At1g49420.1 68414.m05540 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 178

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +1

Query: 283 KDVQTLDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPP 462
           K ++T+D  K + +    +   PKE +K     +  PA   A+    S R      N PP
Sbjct: 64  KLIETIDPAKHVAQKP-KEPEKPKEAEKPKEPEKPKPAAAPAQGDPSSQRV-THGYNPPP 121

Query: 463 IPAYIVYWRKGSQLTWS 513
           +  + V W  G    WS
Sbjct: 122 MMGHPVPWSDGPNYGWS 138


>At2g01690.2 68415.m00097 expressed protein
          Length = 744

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 452 FSDQMPFLRLFACASADNRAGAICDSMVFFFNSL 351
           FSDQ   +R +AC +  N A  +    + FFN +
Sbjct: 100 FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNKI 133


>At2g01690.1 68415.m00096 expressed protein
          Length = 743

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 452 FSDQMPFLRLFACASADNRAGAICDSMVFFFNSL 351
           FSDQ   +R +AC +  N A  +    + FFN +
Sbjct: 100 FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNKI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,759
Number of Sequences: 28952
Number of extensions: 291901
Number of successful extensions: 766
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)