SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0586
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    48   1e-06
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    35   0.011
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    33   0.043
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    32   0.057
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    32   0.075
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    31   0.13 
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    30   0.23 
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    30   0.30 
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    29   0.70 
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    28   0.93 
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    28   0.93 
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    28   0.93 
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   1.2  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    27   2.1  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   3.7  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   3.7  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    26   3.7  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   4.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.9  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   4.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   4.9  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   6.5  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   8.6  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 25/86 (29%), Positives = 48/86 (55%)
 Frame = +1

Query: 250 AYAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRDNWMLKLSEEDYDSVLNVNL 429
           A A++ DVS +  ++  ++  + Q   P  +++N+AG+  D    +LS E +D  +++ L
Sbjct: 47  ALALQADVSKADQIETAIEKVI-QTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVL 105

Query: 430 KGTFLVMQAFAKAMAESSVTGSIINI 507
           +G +L  +     MA+    GSI+NI
Sbjct: 106 RGNYLTQRYVIPHMAKQGKGGSIVNI 131



 Score = 33.9 bits (74), Expect = 0.019
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 74  VVGRLALVTGAGSGIGRAACQVLSKEGATVIAAD 175
           V GR+ L+TGA  GIG+  C++ ++ G  V   D
Sbjct: 3   VEGRVVLITGAAGGIGKVLCKMFTELGDRVAGID 36


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 74  VVGRLALVTGAGSGIGRAACQVLSKEGATVIAADRKYEAAVQTIK 208
           + G++ALVTG+  GIG      L+++GA V  A R  E   + +K
Sbjct: 40  LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMK 84


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +1

Query: 253 YAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRDNWMLKLSEEDYDSVLNVNLK 432
           + ++LD+S+ ++  +  Q+  K   K   + VNS      N +L   ++ ++S    N+ 
Sbjct: 57  HIIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVL 116

Query: 433 GTFLVMQAF 459
           G   V QAF
Sbjct: 117 GPIHVYQAF 125



 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 83  RLALVTGAGSGIGRAACQVLS-KEGATVIAADRKYEAAVQ 199
           ++  + G   GIG +  + LS +EG  V A+ RK EAA +
Sbjct: 6   KIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATE 45


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
 Frame = +1

Query: 253 YAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRDNWMLKLSEEDYDSVLNVNLK 432
           Y  + DV+  K V+    +  K +     ++ N+ GI      + ++ E++ + +NVNL 
Sbjct: 73  YTCKCDVTIPKEVEHAFAEIQKVFDTIDIVVPNN-GICTGKSAIDMTYEEFANEINVNLL 131

Query: 433 GTFLV---------MQAFAKAMAESSVTGSIINI--LALLENTETWG-RQTMRVVTLEWS 576
           G F V          Q     +A +S++G ++N+       NT   G  Q ++ + +EW 
Sbjct: 132 GVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAVEWR 191

Query: 577 R 579
           +
Sbjct: 192 K 192



 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 80  GRLALVTGAGSGIGRAACQVLSKEGA 157
           G+ A+V G   GIG A C V ++ GA
Sbjct: 21  GKNAVVFGGARGIGHAICSVFAEAGA 46


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 65  SGLVVGRLALVTGAGSGIGRAACQVLSKEGATVI 166
           SG +  +  L+TG  SGIG+AA  + ++EG+ ++
Sbjct: 37  SGKLAEKKTLLTGGDSGIGKAAAVMFAREGSDLV 70


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 253 YAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRD-NWMLKLSEEDYDSVLNVNL 429
           + ++LDV++ ++ +D      K  K    + VNS GI++    +LK S+E + S    N+
Sbjct: 58  HIIKLDVTSLRSAKDAAMQVEKVVKCIDVLWVNS-GISKSFQPVLKTSDELWMSHYQTNV 116

Query: 430 KGTFLVMQAFAKAMAESSV 486
            G   V QAF   + E  +
Sbjct: 117 LGPIHVYQAFYHLLKEGKL 135


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 83  RLALVTGAGSGIGRAACQVLS-KEGATVIAADRKYEAAVQ 199
           ++  + G   GIG +  + LS +EG TV A+ RK EAA +
Sbjct: 6   KVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATE 45


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  RLALVTGAGSGIGRAACQVLSKEGATVIAADRKYEAAVQTI 205
           ++ L+TG+  GIG A  + L K+ A VIA  R     ++T+
Sbjct: 7   KVILLTGSSKGIGLATAEALQKK-AKVIAVSRSLTPELETL 46


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 80  GRLALVTGAGSGIGRAACQVLSKEGATVI 166
           G + +VTG  SGIG+   + L+  GA V+
Sbjct: 75  GMVVMVTGGSSGIGQVVVEKLASLGAQVV 103


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 62  VSGLVVGRLALVTGAGSGIGRAACQVLSKEGATVIAADRKYE 187
           V G   G  A+VTGA  GIG+     L+  G  V+   R  E
Sbjct: 51  VYGAKKGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQE 92


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 74  VVGRLALVTGAGSGIGRAACQVLSKEGATVIAADRKYEAAVQTIKT 211
           V G+ A+V G  + +GR    +L K  ATV     K E+    ++T
Sbjct: 159 VQGKHAVVIGRSNIVGRPMSILLEKANATVTLCHSKTESIADIVRT 204


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 253 YAVELDVSNSKAVQDLVQDTLKQYKKPPCIIVNSAGITRDNWMLKLSEEDYDSVLNVNLK 432
           + ++LDVS+ ++  +  Q+  K       + VNSA       ++   ++ ++S    N+ 
Sbjct: 57  HIIKLDVSSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVL 116

Query: 433 GTFLVMQAF 459
           G   V QAF
Sbjct: 117 GPIHVYQAF 125


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 80  GRLALVTGAGSGIGRA-ACQVLSKEGATVIAADRKYEAAVQTIK 208
           G+  L+TGA SGIG++ A ++       +I A R++    +  K
Sbjct: 6   GKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAK 49


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 83  RLALVTGAGSGIGRAACQVLSKEG 154
           R  L+TG  SG+G+   Q+ S++G
Sbjct: 2   RKVLITGGSSGLGKRIAQIWSQKG 25



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 343 IVNSAGITRDNWMLKLSEEDYDSVLNVNL 429
           +V++AG+ + +  ++ SE++ DS++  NL
Sbjct: 79  VVHAAGVLQSSLCVRTSEKEIDSIICTNL 107


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 83  RLALVTGAGSG-IGRAACQVLSKEGATVIAADRKYEAAV 196
           + ALVTGAG+G IG    + L   GA V+    ++   V
Sbjct: 636 KYALVTGAGAGSIGAQIVEGLLAGGAKVVVTTSRFSRKV 674


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 493 NPSLTTRPSLLQMPASLRMYPSSLH*AHYHSLPLRVSASNYP 368
           NPSL +  +      SL   PS+   A+ HS  L+ SAS+ P
Sbjct: 134 NPSLFSSSNAASQRGSLNTAPSNF--AYSHSSSLQTSASSRP 173


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 80  GRLALVTGAGSGIGRAACQVLSKEGATVIAADRKYEAAVQTIKTHTAL 223
           G+L LVTG    IG    + L + G  V    R  E A + I+ +  L
Sbjct: 3   GKLVLVTGVTGFIGAHVAEQLLQAGYRVRGTVRSMEKADELIRLNPGL 50


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 92  LVTGAGSGIGRAACQVLSKEGATVIAADR 178
           L+TG+  G+G A  +V   +G  VIA  R
Sbjct: 9   LITGSSKGLGYALVKVGLAQGYNVIACSR 37


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 317 FSV-SCTRSWTALLLETSNSTAY 252
           FS+ SC   WT+  +ET + T Y
Sbjct: 181 FSIESCNEEWTSTFVETESQTIY 203


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 438 ILSDAGICKSDGRVVSDGFYNKY 506
           +L D G+C S GR++S G    Y
Sbjct: 34  VLQDCGVCDSFGRLLSTGLQCLY 56


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 475 RPSLLQMPASLRMYPSSLH*AHYHSLPLRVSASN 374
           R  L Q+P +L+ YPS L+  HY     +V+  N
Sbjct: 775 RRGLSQLPWALQSYPSPLN-IHYEKFVSKVTIEN 807


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 561 YYSHSLSAPCFRIFQQC*DIYYRTR 487
           ++ + LSAP   +F  C  +YY+T+
Sbjct: 515 FFENYLSAPVILVFFICHKLYYKTK 539


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  LVTGAGSGIGRAACQVLSKEGATVIAADR 178
           LVTG   G+G+A  + L   GA V    R
Sbjct: 26  LVTGGSQGLGKAIAKELVLRGANVTIVAR 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,485
Number of Sequences: 5004
Number of extensions: 55397
Number of successful extensions: 173
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -